Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71480 219 / 3e-72 Nuclear transport factor 2 (NTF2) family protein (.1) AT5G41470 112 / 7e-30 Nuclear transport factor 2 (NTF2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006176 [exp] 260 / 9e-84 AT4G10030 238 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10032294 [exp] 89 / 6e-21 AT5G41470 177 / 1e-54 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10024664 [exp] 85 / 2e-19 AT5G41470 196 / 2e-61 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10003793 [exp] 47 / 1e-06 AT4G22370 86 / 4e-22 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074800 [exp] 248 / 1e-83 AT1G71480 249 / 2e-84 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.013G100600 [exp] 206 / 1e-67 AT1G71480 199 / 5e-65 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.001G100500 [exp] 104 / 6e-27 AT5G41470 213 / 2e-68 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.003G131500 [exp] 97 / 4e-24 AT5G41470 210 / 5e-67 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.016G013200 [exp] 61 / 3e-11 AT4G22370 114 / 6e-32 unknown protein Potri.002G070800 [exp] 57 / 8e-10 AT5G41470 85 / 2e-19 Nuclear transport factor 2 (NTF2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [flax] [poplar] NTF2 PF02136 [flax] [poplar] NTF2 Nuclear transport factor 2 (NTF2) domain
Representative CDS sequence Show only first row Show all	>Lus10041048 pacid=23179771 polypeptide=Lus10041048 locus=Lus10041048.g ID=Lus10041048.BGIv1.0 annot-version=v1.0 ATGAGGTCCACCGTACCACCATTACCATCGACGATTCCCATTTCTTCCCACAACTACTTCCCCGTAACTCACGCCGTTACCCTCCCGCACCGGAGCCTCA AAACAACTGATCGGAACAATTCGCTAGCAGCACCCCGTTCGTCGCACAACAACAACAGAGTACTTGTCGTGGCCGCCGTCGCGCCTACCTCGCCTCCAAT TGAAGATGCTTCGGCCGCCATGCCTTCCGGAGCTGACGTAGTCAGGGGATTCTACGACGGAATCAACGCCCGGGATCTGGAGGCGGTGGAGGAGCTCATC GCTGACAACTGTGTCTACGAGGATCTTATCTTCCCCCGTCCCTTCGTTGGCCGTAAGGCGATACTGGAATTCTTCAACAAGTTCATTGACTCGATCAGCG GGGATCTCAAATTTGCTATAGATGATATATCTTCTCAAGATTCCTCAGCCGTTGGTGTTACCTGGCATTTGGAATGGAAGAACAAGCCTTTCCCGTTCAG TAAAGGGTGCAGCTTTTACCGGCTGGAGGTCATCGACGGCAAGAGGCAAATCATTTACGGAAGGGATAGCGTGGAGCCTGCTCTAAAGCCTGGAGAAGCA GCTTTGACTGCTATTAGGGGTGTGACTTGGTTACTGCAACAGTTTCCGCAGCTAGCAGACCGGCTTCCGCAGTGA
AA sequence Show only first row Show all	>Lus10041048 pacid=23179771 polypeptide=Lus10041048 locus=Lus10041048.g ID=Lus10041048.BGIv1.0 annot-version=v1.0 MRSTVPPLPSTIPISSHNYFPVTHAVTLPHRSLKTTDRNNSLAAPRSSHNNNRVLVVAAVAPTSPPIEDASAAMPSGADVVRGFYDGINARDLEAVEELI ADNCVYEDLIFPRPFVGRKAILEFFNKFIDSISGDLKFAIDDISSQDSSAVGVTWHLEWKNKPFPFSKGCSFYRLEVIDGKRQIIYGRDSVEPALKPGEA ALTAIRGVTWLLQQFPQLADRLPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71480			Nuclear transport factor 2 (NT...		Lus10041048 [exp]	0	1
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10018337 [exp]	1.4	0.9329
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10010844 [exp]	2.6	0.9018
AT4G38225			unknown protein		Lus10026560 [exp]	4.0	0.9121
AT3G09050			unknown protein		Lus10035515 [exp]	4.5	0.9323
AT5G57040			Lactoylglutathione lyase / gly...		Lus10017158 [exp]	5.5	0.9291
AT5G17400		ER-ANT1	endoplasmic reticulum-adenine ...		Lus10034658 [exp]	7.3	0.8725
AT5G52190			Sugar isomerase (SIS) family p...		Lus10038873 [exp]	8.7	0.8728
AT3G23400		FIB4	fibrillin 4, Plastid-lipid ass...		Lus10021209 [exp]	8.9	0.8575
AT4G14450		ATBET12	unknown protein		Lus10021878 [exp]	12.7	0.9046
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10002311 [exp]	17.5	0.8559

Compare expression of checked genes

Lus10041048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.