Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71460 796 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53360 328 / 1e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 313 / 9e-96 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G35130 306 / 6e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 300 / 2e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 298 / 2e-89 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 295 / 4e-88 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22150 289 / 2e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 288 / 2e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 278 / 1e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006174 [exp] 763 / 0 AT1G71460 459 / 2e-157 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10006175 [exp] 602 / 0 AT1G71460 299 / 1e-96 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10017446 [exp] 308 / 2e-93 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 303 / 5e-91 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 294 / 7e-88 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 290 / 3e-86 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 288 / 1e-85 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 288 / 1e-85 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031028 [exp] 282 / 2e-85 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G075400 [exp] 905 / 0 AT1G71460 886 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G007800 [exp] 307 / 2e-93 AT3G22150 1088 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 306 / 7e-93 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 302 / 5e-91 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 296 / 2e-88 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 296 / 5e-88 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G178200 [exp] 292 / 9e-88 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 291 / 4e-87 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G124400 [exp] 287 / 6e-87 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 286 / 2e-84 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041049 pacid=23179687 polypeptide=Lus10041049 locus=Lus10041049.g ID=Lus10041049.BGIv1.0 annot-version=v1.0 ATGGAAGCAACACAATTCCTACACGTATCTCCCCATCTCCACTTTCTGCTTCCAAATCCTATCCACTGCAACTCCGCCAAGCACCAAATCGACAAGTTCA GATGCTCGGTCGCAACTCCGGAACTCGTCTCTCGCAACTTCGACAACAAGTACCCACGGAAACTCTTCTTCCGAAACCGCCCAAAGCAGCAGCGGCGGAA GCCATTCAAGGAGAAAGATGCATTCCCGGAATCTCTCCCGCTCCACAACAGAAACCCACGAGCCATTTACAAAGACATCCAGAGACTGGTCCGGACCGAC AAGCTGCCTCAAGCCCTAGCGGTAATGGACTACGTCGAGCAGCAGGGGATCCCTGTCAATGTCACCACTCTATCGGCCCTAATCGCCGGTTGCATCCGGA CGAAGTCGTTGGCGGACGCCAGGCAGGTTCACGCCCATATTAGGATCCACGAGTTAGAGGGAAACGAGTTCTTGAAGAACAAATTGGTCCATATGTACAC TGCTTGCGAGTCCATTGATGATGCACGCAAGGTGTTCGACGAATGTCCTTCGAGCAATTTATATTCGTGGAATGCTTTGATTAGAGGGACTGTGATATCG GGTAAGAAGAGGTATGGAGATGTAGTGTCTGCTTATGGGGAGATGAGGGAAATGGGCATTGAGCCAAATGAGTACACTTTCTGTAACGTCATTAAGAGCT TTGCTGGTGCATCGGCTTTTAAACAAGGGTTGAAGACTCATGCGATGCTGGTGAAGAGCGGGTGGATCGGTAGCTCGATTCTTAAAACCGGTTTGATCGA CTTGTATTTTAAATGTGGGAATATCAGGTTTGCTCACAAAGTGTTCGACGAAATGCCTGAAGAGAAAGACAGTACTCTGTGGGGTACTATGATTGCTGGT TTCGCCCACAATAGGCGCCAACTTGAGGCATTGGATTACGTAAGGTGGATGGTGGATGAAGGGAACTTTCCGAATTTGGTTATCTTAACGACGATTCTTC CCGCCATAGGTGAAGTAAAGGCTAGAAGAATAGGACAGGAGGTTCATGGCTTCATTCTGAAGGAAAGGACTCTTTCTAGGGAGATAACTCTTCAGACTGG GTTGATTGACATGTACTGCAAATGTGGCGATTTGACTTCAGGGAGGAGCGTTTTTTACGGCACCAAGAACCGGAATGTGGTTTCCTGGACTGCTTTGATG TCAGGGTATGTTTCTAACGGTCGATTCGAGCAGGCATTGAGATCAGTGGTTTGGATGCAGCAAGAAGGTTTTCGTCCCGACGTGATCACAGTTGTAACTG TCCTGCCAGTCTGTGGAAAGTTGCAGGCTTTGAAGCAAGGGAAGGAAATACATTCTTATGCTATGAGAAGGTGGTTCTTCCCTAATGTATCGGTAACCAC TTCCCTGATCAAAATGTACTCGGATTGCGGTGTTCTTGATTATTCGATCAAGTTGTTTGACGCAACGGAGAGTAGGAATGCCATATCGTGGACGTCGATG CTGAATTCCTATGTGGAAAGGGGGTTTATAAAAGAAGCATTCCAATTGTTCAGGTCAATGCTGCTTTCGAAATCCCGGCCAGATTCAGTGACATTAGCTA TGATTCTAACTGCCTGTGGTGAGTGTAAAGCTTCAAAGCTCGGAAAGGAGATCCATGGACAACTTCTGAAGAAAAGGCTAGTGGCCGTCCCTTTTGTATC GGCGGGGATCATCAGGATGTATGGAAGTTGTGGATTGATTGGTTACGCCAGGTCGGTCTTTGATACGGTATCTAGCAAGGGCTCGAGGACATGGACTGCC GTTATAGAGGCACACGGATATAACAACCTCTATGAAGTTGCAATGAGTTTGTTCAAAGAGATGACATCTCGCGGTTGTGCTCCTACCCAGTTCACGTTCG ATGTGGTTCTACCGATATGTGGGCGAGCGGGATTCACGGACGATGCTTGCCGGATTATCGAGCTAATGAGACGGAGATATGATGTGAATGTTACAAAAGA ACACTATTCTATAGTCGTTGGACTTCTCAACTCTTGTGGCCGCTCTGCGGAGGCCGAGAGATATGCGAAAATGATGGTATGA
AA sequence Show only first row Show all	>Lus10041049 pacid=23179687 polypeptide=Lus10041049 locus=Lus10041049.g ID=Lus10041049.BGIv1.0 annot-version=v1.0 MEATQFLHVSPHLHFLLPNPIHCNSAKHQIDKFRCSVATPELVSRNFDNKYPRKLFFRNRPKQQRRKPFKEKDAFPESLPLHNRNPRAIYKDIQRLVRTD KLPQALAVMDYVEQQGIPVNVTTLSALIAGCIRTKSLADARQVHAHIRIHELEGNEFLKNKLVHMYTACESIDDARKVFDECPSSNLYSWNALIRGTVIS GKKRYGDVVSAYGEMREMGIEPNEYTFCNVIKSFAGASAFKQGLKTHAMLVKSGWIGSSILKTGLIDLYFKCGNIRFAHKVFDEMPEEKDSTLWGTMIAG FAHNRRQLEALDYVRWMVDEGNFPNLVILTTILPAIGEVKARRIGQEVHGFILKERTLSREITLQTGLIDMYCKCGDLTSGRSVFYGTKNRNVVSWTALM SGYVSNGRFEQALRSVVWMQQEGFRPDVITVVTVLPVCGKLQALKQGKEIHSYAMRRWFFPNVSVTTSLIKMYSDCGVLDYSIKLFDATESRNAISWTSM LNSYVERGFIKEAFQLFRSMLLSKSRPDSVTLAMILTACGECKASKLGKEIHGQLLKKRLVAVPFVSAGIIRMYGSCGLIGYARSVFDTVSSKGSRTWTA VIEAHGYNNLYEVAMSLFKEMTSRGCAPTQFTFDVVLPICGRAGFTDDACRIIELMRRRYDVNVTKEHYSIVVGLLNSCGRSAEAERYAKMMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71460			Pentatricopeptide repeat (PPR-...		Lus10041049 [exp]	0	1
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10019864 [exp]	16.1	0.6864
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10025611 [exp]	20.3	0.6597
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	20.9	0.6607
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10040504 [exp]	25.8	0.6638
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	28.4	0.6466
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10030225 [exp]	33.9	0.6373
AT1G08410			P-loop containing nucleoside t...		Lus10004103 [exp]	43.7	0.6487
AT5G56310			Pentatricopeptide repeat (PPR)...		Lus10002024 [exp]	49.1	0.6447
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10006048 [exp]	51.6	0.6534
AT2G17033			pentatricopeptide (PPR) repeat...		Lus10025090 [exp]	59.7	0.6072

Compare expression of checked genes

Lus10041049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.