Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71140 357 / 5e-119 MATE efflux family protein (.1) AT1G66780 339 / 3e-112 MATE efflux family protein (.1) AT1G64820 339 / 4e-112 MATE efflux family protein (.1) AT1G15170 337 / 2e-111 MATE efflux family protein (.1) AT1G15150 334 / 3e-110 MATE efflux family protein (.1) AT1G15160 326 / 5e-107 MATE efflux family protein (.1) AT1G66760 324 / 2e-106 MATE efflux family protein (.1.2) AT2G04090 320 / 4e-105 MATE efflux family protein (.1) AT2G04100 320 / 1e-104 MATE efflux family protein (.1) AT1G15180 319 / 1e-104 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006171 [exp] 731 / 0 AT1G71140 452 / 5e-154 MATE efflux family protein (.1) Lus10009140 [exp] 391 / 2e-132 AT1G64820 560 / 0.0 MATE efflux family protein (.1) Lus10028504 [exp] 387 / 1e-130 AT1G64820 556 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 370 / 4e-124 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 370 / 5e-124 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10018136 [exp] 370 / 5e-124 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 365 / 3e-122 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 357 / 6e-114 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 355 / 3e-113 AT1G15170 542 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G075800 [exp] 438 / 4e-152 AT1G71140 407 / 2e-139 MATE efflux family protein (.1) Potri.017G120400 [exp] 400 / 2e-136 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.017G120500 [exp] 392 / 4e-133 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.004G094900 [exp] 392 / 5e-133 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.010G116900 [exp] 392 / 7e-133 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 387 / 1e-130 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.017G120600 [exp] 386 / 1e-130 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.004G094800 [exp] 379 / 3e-128 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.008G126500 [exp] 380 / 4e-128 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 375 / 1e-126 AT1G71140 482 / 8e-168 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10041053 pacid=23179525 polypeptide=Lus10041053 locus=Lus10041053.g ID=Lus10041053.BGIv1.0 annot-version=v1.0 ATGGAGGGTAGGAGTAGTAAATGGGTTGTGTGTCTGAATGAGGTGAAGACAGTGAGCTTAGTTGCTGCTCCAATGGTGGTTGTCACTGTGTTACAGTTCC TTGTCCAGTTTGTTGCAACCATGATGGTTGGCCACCTCGACCAGCTCTCCCTCTCCGCTGCCTCCATTGGTGCTGCTTTCTCCCTTGTTACCGGCTTCAC CGTGCTTGCTGGGATGGCGGGCGGACTAGGGTGGACTGGAGACACTATGTGGGCAAGCATATGGGGCAGAGCAATACCACAAGCTAGGAACTTACATGTA TTCTGCCATAACATCCATGACCCTGACAAGTTCCTCATCCTAGCTGGACAGGACCATTTGATCTCTGTCCTAGCTCGGAAATACTCCATCTGCCTGGTTC CGGGCCTGTTTGGTTCAGCTATGCTTCAAGCCATGACGCGTTACTTCCAAACACAGAGCTTGATCCTTCCCATGCTTTTTGCTTCTCTTGCAACAATGTG TCTCCACGTCCCACTTTGCTGGTTTCTTGTCTTCAAAACCGGGCTGAGATACTTGGGTGCTGCTTTGGCTGTTAGCATATCCACTTGGGCTAATGTTATC TTACTTGTGATTTACATGACTTGCTCGTCCAAATGTGCAAAGACTCTCTCTAAATCCAAGTTCAGGGATCTCTACTTAGGCACTGGGGAGTTCTTGCGCT TTGCCATTCCTTCTGCAATGATGACCTGTCTGGAATGGTGGTCATATGATTTGCTTATTTTACTTGCTGGACTCTTACCAAATCCAAAGTTGGAATCTTC TGTGATTTCCATATGCTTCTCAATCACTTACTTGCACTACTACATTCCATATGGGTTTGGAGCTACTATAAGTACGAGGGTGTCGAACGAGCTGGGGGCA GGGAAACCAAAGGCTGCTAAGATGGCAGTTCAAGCTGTAATGATTCTGGCAGTAATGGAACTAGCTGTTGTAATCCTACCCCTCTTCCTATGTCGACACA TTTTGGGGTATGTTTTCAGCAATGACAAGGAAATTGTGGACTACGTTGCTGACATGGCCCCTTTCATGTGCCTCTCAGCCACCATGGACACTTTACAATC TGTTCTTTCAGGGGTTGTGAGAGGAAGTGGGAAGCAGAACTTGGGGGCATTTGTGAATCTTGGGGCTTATTATGTTGTTGGGACACCATTGGCTGTTGTA TTGGCATTTGTTGCACATTTAAGAGGGAAAGGATTGTTGATTGGATTAGCAACTGGATCAGGTCTACAAGCTGCTATGTTTGCAGTCAGAATATTCCTCA CAGATTGGGAACAGCAGGCATCGAAAGCAAGGGCGAGGATCTTTCAGGGAGAAGAGACACAGGGTCCTTGA
AA sequence Show only first row Show all	>Lus10041053 pacid=23179525 polypeptide=Lus10041053 locus=Lus10041053.g ID=Lus10041053.BGIv1.0 annot-version=v1.0 MEGRSSKWVVCLNEVKTVSLVAAPMVVVTVLQFLVQFVATMMVGHLDQLSLSAASIGAAFSLVTGFTVLAGMAGGLGWTGDTMWASIWGRAIPQARNLHV FCHNIHDPDKFLILAGQDHLISVLARKYSICLVPGLFGSAMLQAMTRYFQTQSLILPMLFASLATMCLHVPLCWFLVFKTGLRYLGAALAVSISTWANVI LLVIYMTCSSKCAKTLSKSKFRDLYLGTGEFLRFAIPSAMMTCLEWWSYDLLILLAGLLPNPKLESSVISICFSITYLHYYIPYGFGATISTRVSNELGA GKPKAAKMAVQAVMILAVMELAVVILPLFLCRHILGYVFSNDKEIVDYVADMAPFMCLSATMDTLQSVLSGVVRGSGKQNLGAFVNLGAYYVVGTPLAVV LAFVAHLRGKGLLIGLATGSGLQAAMFAVRIFLTDWEQQASKARARIFQGEETQGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71140			MATE efflux family protein (.1...		Lus10041053 [exp]	0	1
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10021872 [exp]	2.0	0.8404
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10003207 [exp]	8.2	0.8184
AT4G14740			Plant protein of unknown funct...		Lus10006614 [exp]	9.9	0.8195
AT2G42690			alpha/beta-Hydrolases superfam...		Lus10041967 [exp]	11.0	0.8174
AT3G43660			Vacuolar iron transporter (VIT...		Lus10028596 [exp]	12.4	0.8146
					Lus10008223 [exp]	12.6	0.8094
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	13.0	0.8074
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018489 [exp]	14.4	0.7895
AT3G18770			Autophagy-related protein 13 (...		Lus10006790 [exp]	15.0	0.7871
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10024820 [exp]	16.7	0.8009

Compare expression of checked genes

Lus10041053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.