Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22360 548 / 0 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22380 543 / 0 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22400 524 / 0 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 508 / 8e-178 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22370 506 / 4e-177 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 476 / 3e-165 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT3G46670 255 / 2e-79 UGT76E11 UDP-glucosyl transferase 76E11 (.1) AT3G46660 246 / 9e-76 UGT76E12 UDP-glucosyl transferase 76E12 (.1) AT5G38010 234 / 1e-71 UDP-Glycosyltransferase superfamily protein (.1) AT5G59580 229 / 2e-69 UGT76E1 UDP-glucosyl transferase 76E1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031388 [exp] 538 / 0 AT1G22400 644 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10024583 [exp] 533 / 0 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032220 [exp] 530 / 0 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10032218 [exp] 524 / 0 AT1G22380 564 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024584 [exp] 521 / 0 AT1G22400 570 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10000993 [exp] 504 / 6e-176 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013925 [exp] 496 / 3e-173 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10013924 [exp] 490 / 2e-170 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013923 [exp] 483 / 6e-168 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G052166 [exp] 630 / 0 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 624 / 0 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 622 / 0 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 572 / 0 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 564 / 0 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098300 [exp] 561 / 0 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 558 / 0 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 557 / 0 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 557 / 0 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 550 / 0 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10041055 pacid=23179550 polypeptide=Lus10041055 locus=Lus10041055.g ID=Lus10041055.BGIv1.0 annot-version=v1.0 ATGGGATCCCACGGCGGCGCGAACACTAAACGACACGTCGTATGCATCCCTTACCCGGCGCAAGGCCACTTGAACCCGATGATGAAGCTAGCGAAGCTCC TCCACTCCCTCGGCGGCTTCCACATCTCCTACGTCAACACCGACTACAACCACCGCCGCCTCCTCAAATCCCGGGGCGCCGCCGCCCTCGACGGCCTCCC TGACTTCCGCTTTCATTCCATCCCGGACGGCCTCCCGCCGTCAGAGCTCGAGGACGCCACTCAGGACATCCCAGCACTCTGCGAGTCCACCAAGAACACC TGCACGGTTCCGTTCCGGGACCTCCTCCTCAACCTCAACGCTTCGGCCGATGATGATACTCCGCCTGTGAGCTACGTGATATCCGACGCTTGTATGAGCT TCACCCTCGACGCCGCGGAGGAGCTCGGGATTCCTGAAGTGGTGTTCTGGACCCCCAGTGCTTGTGGAGTTTTGGGCTATGCTAATTACCGCCGGCTGGC TGAAGAAGGCCTCGTTCCGCTTAAAGATGAGAAAGATCTTACAAATGGCTATTTAAACACTCCGGTGGATTGGATTCCGGCAATGCAAGGAATCCAATTA AAAAACTTTCCAAATTTCATCAGAACTACCAACGCAAACGACACCATGTTCAATTTCCTCCGCAGAGAAATTGACCGAACTTCGAGAGTCTCTGCCGTCA TAATAAACACCTTCCACCATCTCGAACAGCCCGTCCTCGATTCCCTCTCTGCCATCTTCCCTCCAATTTACCCAATCGGCCCTCTCACCCTAATGCTCGA CCAAATCATCACTCCAATTCCAAACCCTAACAGCAACAACAATAACCTCAACTCGATCAGCTCAAGCTTGTGGAAAGAAGAGCCAGAGTGTCTCCAATGG CTGAACACCAAGGAACCAAACTCCGTCGTCTACGTCAACTTCGGGAGCATAACCGTCGTGACACGTCAGCATATGGTGGAATTCGCGTGGGGGCTGGCCA ACAGCAAGAAGACCTTTCTGTGGATCATACGGCCGGATCTGGTCAGAGGCGAATCGGCTCTGCTTCCCGAGGAATTCGCGGCGGAGACAAGGGACAGAGG GATGCTGGCCAGCTGGTGCCCGCAGGAGGAGGTGCTCAAGCATCCGGCAATCGGAGGGTTCTTGAGCCACATGGGGTGGAATTCGACTTTGGACAGCTTG TGTAACGGCGTGCCGATGGTTTGCTGGCCGTTCTTCGCCGAGCAGCAGACGAATTGCTGGTTCGCTTGCGGCGTGTGGGGGATTGGGATGGAGATCGACA GCAATGTGAAGCGAGGGGAAGTGGAGGAGCTGGTGAGGGAGTTGATGGAAGGAGGGAAAGGGAAGGAGATGAAGTTGAAGGCGGAGGAGTGGAAGAAGCT GGCGGCGGCGGCAGCGCAGCCTGGCGGGTCTTCCCGTCGGAGTTTCGATGAACTTGTGGAGCTTCTTCAGGGCAGAGGAGGAAGTAAATTAGCAGTTGAG GAGTGA
AA sequence Show only first row Show all	>Lus10041055 pacid=23179550 polypeptide=Lus10041055 locus=Lus10041055.g ID=Lus10041055.BGIv1.0 annot-version=v1.0 MGSHGGANTKRHVVCIPYPAQGHLNPMMKLAKLLHSLGGFHISYVNTDYNHRRLLKSRGAAALDGLPDFRFHSIPDGLPPSELEDATQDIPALCESTKNT CTVPFRDLLLNLNASADDDTPPVSYVISDACMSFTLDAAEELGIPEVVFWTPSACGVLGYANYRRLAEEGLVPLKDEKDLTNGYLNTPVDWIPAMQGIQL KNFPNFIRTTNANDTMFNFLRREIDRTSRVSAVIINTFHHLEQPVLDSLSAIFPPIYPIGPLTLMLDQIITPIPNPNSNNNNLNSISSSLWKEEPECLQW LNTKEPNSVVYVNFGSITVVTRQHMVEFAWGLANSKKTFLWIIRPDLVRGESALLPEEFAAETRDRGMLASWCPQEEVLKHPAIGGFLSHMGWNSTLDSL CNGVPMVCWPFFAEQQTNCWFACGVWGIGMEIDSNVKRGEVEELVRELMEGGKGKEMKLKAEEWKKLAAAAAQPGGSSRRSFDELVELLQGRGGSKLAVE E

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Lus10041055 [exp]	0	1
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	1.4	0.9844
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	2.0	0.9689
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021936 [exp]	3.5	0.9490
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	4.0	0.9563
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10031859 [exp]	4.5	0.9404
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10006317 [exp]	5.3	0.9451
AT5G50375		CPI1	cyclopropyl isomerase (.1.2)		Lus10038969 [exp]	5.3	0.9382
AT3G55230			Disease resistance-responsive ...		Lus10030318 [exp]	5.9	0.9535
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10008097 [exp]	6.0	0.9434
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	6.2	0.9388

Compare expression of checked genes

Lus10041055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.