Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31480 1071 / 0 SGR2 shoot gravitropism 2 (SGR2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003520 [exp] 1169 / 0 AT1G31480 1035 / 0.0 shoot gravitropism 2 (SGR2) (.1) Lus10002946 [exp] 243 / 1e-72 AT1G31480 200 / 7e-58 shoot gravitropism 2 (SGR2) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G099700 [exp] 1169 / 0 AT1G31480 1154 / 0.0 shoot gravitropism 2 (SGR2) (.1) Potri.019G072300 [exp] 1168 / 0 AT1G31480 1168 / 0.0 shoot gravitropism 2 (SGR2) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02862 [flax] [poplar] DDHD DDHD domain
Representative CDS sequence Show only first row Show all	>Lus10041056 pacid=23179884 polypeptide=Lus10041056 locus=Lus10041056.g ID=Lus10041056.BGIv1.0 annot-version=v1.0 ATGGCGGAGCCGGTGTCAAATCCCGAAGGTTCTGAGGAAACATTGCCTCATTTGTTAAAGAATACCCCATCAAACATTGCACGGTTGGAGGATGTGATAG AGAACTCAAAAGGTCGGCAGAAGTATCTTGCACATACTAAGAGTCCTTCTGATGGTGGTGATGTGAGGTGGTACTTTTGTAAAGTCCCTCTAGCTCTCAA AGAATTAGCTGCTTCTGTTCCACGCACAGAAGTAGTAGAGAAGGGCGAATATTTTCGTTTTGGAATGAGGGATTCTCTTGCAATTGAGGCTTCGTTCTTG CAGGTCATACTTGCTTCCATGCACCTACAGAAGGAGGATGGATTGCTTTCTATGTGGTGGAAAGAGTATGCCGAATGTAGTGAAGGTCCCAGGGCACGAC CATCGTCAAGTAAGAAGATAGTTGCTGAAGAACCTGATCTGTTTGACGTGGATGAGGAAAGAGTTGGTGTGCCTGTGAAAGGAGGACTTTATGAGGTAGA TCTAGCAACGCGACACTGTTTTCCTGTTTACTGGTATGGAGAAAATCGGCGGGTTTTAAGAGGTCACTGGTTTGCCCGTAAGCGGGGATTAGATTGGTTG CCAGTTCGTGAAGATGTTGCTGAACAATTAGAGGTGGCGTACCACAGCCAGGTTTGGCATCGTAGGACATTCCAATCCTCTGGACTTTTTGCTGCTCGTG TTGAGCTGCAAGGATCTAAACCAGGACTTCATGCACTTTTCATGGGTGAAGATGATACCTGGGAGGCTTGGCTCAATGTTGATGCTTCTGGTGTTGCTAG TATTGTCAATTTTAGTGGAAATGGAATCAAGTTAAGGCGTGGTTATTCTGCATCTCATTCACCAAAGCCAACTCAGGATGAATTGTGGCAGCAGAAGGAG GAGGAAATGGATGATTACTGCTCACAGGTTCCTGTACGGCATGTGGTGTTTGTGGTTCACGGTATTGGTCAAAGGCTGGAAAAGTCCAACTTGGTTGATG ACGTTACAAATTTACGCCATGCTACTGCAAGTATTGCTGAAAGACATTTAACTTCTCATCAGCTTGCTTCCCAGCGAGTCCTCTTTATTCCATGCCAGTG GAGAAAGGGCTTGAAACTTAGTGGTGAAGCTGCTGTTGATAAGATCACTTTAGATGGTGTGCGCGGTCTGCGTGTTATGCTTGGTGCAACAGCTCATGAT ATACTGTATTACATGAGTCCCATCTATTGTCAAGATATTATTAACTCGGTATCAAATCAATTAAACCGTTTGTACTTAAAGTTTCTCAAGCGAAATCCTG GCTATGATGGTAAGGTTTCCATATATGGTCATTCTTTGGGGAGTGTCCTCTCTTATGACATCCTGTGCCATCAAGAGAACCTGTCATCCCCATTTCCTAT GGAATGGATGTACAAAGAACAAGCTTCCACTAATTTGTTCCCTGATCTGAATGACGAATTATCAATGCATGACCGAGGTTCCATACTAGAGGGTATCAAT TCCAATGAGCGGAAATTGGATTTAGCTGATGAGGTACTGATGAGAGAGGAATCAACTCGGGTGCATGATGATGGTAATGTTGAAGATACTGCCACAATGA CAAGTCCTACGTTGCATGATGATGACATGAATGCCATGTCACTAGAATCTGACCAAACTGAGCCCCTTCCCAATTTGGCCGAATCTCAAATCCTTTCCCT GGAGAACGATGGGTTAGGTGAAGATGCCACTATCCTTTCCCTGGAGAACGATGGGTTAGGTGAAGATGCCACTATCCCACTATTCCTTTCCCTGGAGAAC GATGGGTTAGGTGAAGATGCCACTATATCTGGTGCTGATTTAATTGAAGGACGGGAGAATGAGGACGTGGAAGACTGCAAAGAAATTGAAGGCTTGAAGG AGGAGATAAATTGCCTTAAAGCAAGAATAGCAGAACTTGAATCGAAGAGTGAGGCTGGGCCTGCTTGTGAAAGTAACGCGATACCTCTAGCGAATCCAAG CCAGTCTGCTGAAGATAATACCCTGACAAGCCCACAAAATGAAGCTCAGAATTATACGCCGTACATTAAGTATACAAAACTTGAGTTTAAGGTAGACACC TTCTATGCTGTTGGTTCTCCTCTTGGAGTATTCCTTGCTCTTCGCAACGTTCGTATTGGAATTGGCCAAGGACAAGGTTATTGGATGGAAGAAGATATCA CAGAGGAGATTCCGGCTTGTAATCAAATGTTCAACATTTTCCACCCATTTGATCCTGTAGCGTACAGAATAGAACCACTCGTGTGTAAAGAATTCCTTGA AAAACGTCCAGTCATTATTCCTTATCACAGAGGTGGAAAGCGTATGCACATTGGATTTCAGGAATTTTCTGAAGATTTAGCAGCTTGTTCTCAGATGATC AAGGATCGTTTTAATTCTGTAAGGGCTAAAGTTCTTTCATTCCGGCAGTCAAAAAATGAGAATATCCTCGATGAACAACGGGAAAATGTTGACGACAACA AAGAAAGAACATATGGTTCTCTCATGATGGAACGGTTGACTGGAAGTGAAGAAGGGCGAATAGACCACATGCTTCAGGATAAAACTTTTGAACATTCATA TCTTCAAGCAGTTGGAGCACATACGAACTACTGGAAGGATTGCGACACTGTACTTTTCGTGTTGAAGCACTTGTACAGAGGCATATCTGATGAAACCGAT GAGGACGATGAGACTGCTGAGGGCAACCCGAATGGCGAAAGTAGGTCTAACACATGGAGAGAGCGGAGAGAGACAGCTGAAGAGGAACTGCCTTTGACAT TCTCTGACCAATTAGCAAAGAAAAACTTCTCCAGGAAAGCGAAAAGGTTTGTGACGAGGCCACCATAG
AA sequence Show only first row Show all	>Lus10041056 pacid=23179884 polypeptide=Lus10041056 locus=Lus10041056.g ID=Lus10041056.BGIv1.0 annot-version=v1.0 MAEPVSNPEGSEETLPHLLKNTPSNIARLEDVIENSKGRQKYLAHTKSPSDGGDVRWYFCKVPLALKELAASVPRTEVVEKGEYFRFGMRDSLAIEASFL QVILASMHLQKEDGLLSMWWKEYAECSEGPRARPSSSKKIVAEEPDLFDVDEERVGVPVKGGLYEVDLATRHCFPVYWYGENRRVLRGHWFARKRGLDWL PVREDVAEQLEVAYHSQVWHRRTFQSSGLFAARVELQGSKPGLHALFMGEDDTWEAWLNVDASGVASIVNFSGNGIKLRRGYSASHSPKPTQDELWQQKE EEMDDYCSQVPVRHVVFVVHGIGQRLEKSNLVDDVTNLRHATASIAERHLTSHQLASQRVLFIPCQWRKGLKLSGEAAVDKITLDGVRGLRVMLGATAHD ILYYMSPIYCQDIINSVSNQLNRLYLKFLKRNPGYDGKVSIYGHSLGSVLSYDILCHQENLSSPFPMEWMYKEQASTNLFPDLNDELSMHDRGSILEGIN SNERKLDLADEVLMREESTRVHDDGNVEDTATMTSPTLHDDDMNAMSLESDQTEPLPNLAESQILSLENDGLGEDATILSLENDGLGEDATIPLFLSLEN DGLGEDATISGADLIEGRENEDVEDCKEIEGLKEEINCLKARIAELESKSEAGPACESNAIPLANPSQSAEDNTLTSPQNEAQNYTPYIKYTKLEFKVDT FYAVGSPLGVFLALRNVRIGIGQGQGYWMEEDITEEIPACNQMFNIFHPFDPVAYRIEPLVCKEFLEKRPVIIPYHRGGKRMHIGFQEFSEDLAACSQMI KDRFNSVRAKVLSFRQSKNENILDEQRENVDDNKERTYGSLMMERLTGSEEGRIDHMLQDKTFEHSYLQAVGAHTNYWKDCDTVLFVLKHLYRGISDETD EDDETAEGNPNGESRSNTWRERRETAEEELPLTFSDQLAKKNFSRKAKRFVTRPP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10041056 [exp]	0	1
AT5G15070			Phosphoglycerate mutase-like f...		Lus10032191 [exp]	2.0	0.8263
AT1G31910			GHMP kinase family protein (.1...		Lus10012121 [exp]	9.6	0.8525
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000356 [exp]	12.0	0.8064
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10017137 [exp]	13.6	0.7707
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	16.7	0.7823
AT3G07300			NagB/RpiA/CoA transferase-like...		Lus10016349 [exp]	17.7	0.7530
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	19.6	0.8384
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000617 [exp]	19.9	0.8038
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10023865 [exp]	27.3	0.8142
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Lus10037338 [exp]	40.9	0.7503

Compare expression of checked genes

Lus10041056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.