Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47770 544 / 0 FPS1 farnesyl diphosphate synthase 1 (.1) AT4G17190 539 / 0 FPS2 farnesyl diphosphate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006168 [exp] 664 / 0 AT5G47770 575 / 0.0 farnesyl diphosphate synthase 1 (.1) Lus10022545 [exp] 429 / 5e-151 AT4G17190 444 / 3e-157 farnesyl diphosphate synthase 2 (.1.2) Lus10028509 [exp] 41 / 0.001 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003400 [exp] 613 / 0 AT5G47770 588 / 0.0 farnesyl diphosphate synthase 1 (.1) Potri.016G004100 [exp] 195 / 1e-62 AT5G47770 174 / 2e-54 farnesyl diphosphate synthase 1 (.1) Potri.004G090600 [exp] 48 / 5e-06 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10041057 pacid=23179961 polypeptide=Lus10041057 locus=Lus10041057.g ID=Lus10041057.BGIv1.0 annot-version=v1.0 ATGGCAGATATGAAGTCCACCTTCTTAAAGGTTTATGATCTTTTGAAGAAGGATCTCCTTGAAGATCCTGCCTTTGAATGGAGTCCTGATTCTAGTCAAT GGGTTGACAAGATGTTGGACTACAATGTGCCAGGAGGAAAGTTGAACAGAGGGCTATCTGTGGTTGACAGCTACCAATTATTGAAAGAAGGAAAGGACTT AACTGAAGAAGAAATATTCCTTGCTAGCGCTCTTGGTTGGTGTATTGAATGGCTTCAAGCATATTTTCTGGTCCTTGATGACATCATGGATGGCTCTCAC ACTCGGCGTGGTCAACCTTGCTGGTTTAGGGTGCCCAAGGTCGGTCTCATTGCTGCAAATGACGGGATTGTGCTCCGTAATCATATTCCCAGGATTCTCA AAAAGCACTTCAGGAGCAAGGCATACTATGTAGATCTTCTGGATTTATTCAACGAGGTGGAGTTTCAAACTGCCCATGGACAGATGATTGATCTAATTAC TACACTCGAGGGAGAAAAGGATTTGTCCAAATATACTTCGACACTCCACCGAAGAATCGTTCAGTATAAGACAGCATACTACTCCTTCTACCTCCCTGTT GCTTGCGGATTGCTGATGACTGGTGAGAAACTCGAAGAACACGTTGAAGTGCAGAACATTTTGGTTGATATGGGAACCTACTTCCAAGTGCAGGATGATT ATCTAGACTGCTTTGGGGATCCTGAGACTATTGGTAAGATAGGAACGGACATAGAAGATTTCAAGTGCTCTTGGTTGGTGGTGAAGGCTTTTGAACTTAG CAATGAAGAACAAAAGAAACTGTTGCTTGAAAACTATGGGAAAGCTGACCCAGCCAATGTTGCTAAAGTGAAGGCCCTCTACCATGACTTGAATCTTCAG GGAGTGTTCGCTGAGTACGAGAGCAAAAGCTACGAGAAGCTGATAACCTCCATCGAAGCTCATCCTAGCAAAGCAGTGCAAGCAGTGTTGAAGTCATTTC TGGCAAAAATTTACAAGAGGCTGAAGTGA
AA sequence Show only first row Show all	>Lus10041057 pacid=23179961 polypeptide=Lus10041057 locus=Lus10041057.g ID=Lus10041057.BGIv1.0 annot-version=v1.0 MADMKSTFLKVYDLLKKDLLEDPAFEWSPDSSQWVDKMLDYNVPGGKLNRGLSVVDSYQLLKEGKDLTEEEIFLASALGWCIEWLQAYFLVLDDIMDGSH TRRGQPCWFRVPKVGLIAANDGIVLRNHIPRILKKHFRSKAYYVDLLDLFNEVEFQTAHGQMIDLITTLEGEKDLSKYTSTLHRRIVQYKTAYYSFYLPV ACGLLMTGEKLEEHVEVQNILVDMGTYFQVQDDYLDCFGDPETIGKIGTDIEDFKCSWLVVKAFELSNEEQKKLLLENYGKADPANVAKVKALYHDLNLQ GVFAEYESKSYEKLITSIEAHPSKAVQAVLKSFLAKIYKRLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Lus10041057 [exp]	0	1
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10011627 [exp]	11.2	0.7953
AT2G29570		ATPCNA2, PCNA2	A. THALIANA PROLIFERATING CELL...		Lus10005874 [exp]	15.5	0.8259
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10020992 [exp]	18.2	0.7371
AT5G42330			unknown protein		Lus10012265 [exp]	25.3	0.7877
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Lus10023442 [exp]	38.2	0.7729
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016695 [exp]	43.2	0.7826
AT3G17030			Nucleic acid-binding proteins ...		Lus10016902 [exp]	46.9	0.7731
AT1G24160			unknown protein		Lus10002952 [exp]	63.0	0.7456
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10042728 [exp]	65.4	0.7303
AT2G46040	ARID		ARID/BRIGHT DNA-binding domain...		Lus10014762 [exp]	67.5	0.7448

Compare expression of checked genes

Lus10041057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.