Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07830 301 / 1e-98 Pectin lyase-like superfamily protein (.1) AT3G07820 297 / 3e-97 Pectin lyase-like superfamily protein (.1) AT3G14040 290 / 5e-94 Pectin lyase-like superfamily protein (.1) AT5G48140 288 / 8e-94 Pectin lyase-like superfamily protein (.1) AT3G07840 287 / 3e-93 Pectin lyase-like superfamily protein (.1) AT1G02790 286 / 9e-93 PGA4 polygalacturonase 4 (.1) AT3G07850 282 / 7e-91 Pectin lyase-like superfamily protein (.1) AT2G43890 265 / 5e-85 Pectin lyase-like superfamily protein (.1) AT1G78400 254 / 1e-80 Pectin lyase-like superfamily protein (.1) AT4G18180 253 / 5e-80 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041058 [exp] 724 / 0 AT3G07830 311 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10006167 [exp] 500 / 1e-177 AT3G07830 224 / 3e-70 Pectin lyase-like superfamily protein (.1) Lus10043088 [exp] 374 / 1e-127 AT3G07820 360 / 6e-123 Pectin lyase-like superfamily protein (.1) Lus10009606 [exp] 360 / 5e-122 AT3G07840 323 / 4e-108 Pectin lyase-like superfamily protein (.1) Lus10039154 [exp] 343 / 4e-115 AT5G48140 335 / 8e-113 Pectin lyase-like superfamily protein (.1) Lus10013784 [exp] 341 / 3e-114 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10013780 [exp] 341 / 3e-114 AT5G48140 337 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10009605 [exp] 341 / 7e-112 AT3G07840 317 / 1e-102 Pectin lyase-like superfamily protein (.1) Lus10003001 [exp] 323 / 3e-103 AT3G07840 362 / 1e-118 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G067166 [exp] 328 / 1e-109 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067200 [exp] 328 / 1e-109 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067133 [exp] 328 / 1e-109 AT3G07820 400 / 3e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067100 [exp] 327 / 3e-109 AT3G07820 404 / 5e-140 Pectin lyase-like superfamily protein (.1) Potri.019G066800 [exp] 326 / 9e-109 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067000 [exp] 326 / 9e-109 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.019G067050 [exp] 326 / 9e-109 AT3G07820 399 / 5e-138 Pectin lyase-like superfamily protein (.1) Potri.007G035800 [exp] 296 / 4e-97 AT3G07820 350 / 7e-119 Pectin lyase-like superfamily protein (.1) Potri.009G169100 [exp] 278 / 2e-89 AT4G18180 563 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G202100 [exp] 265 / 1e-84 AT1G02790 399 / 2e-137 polygalacturonase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10041059 pacid=23179803 polypeptide=Lus10041059 locus=Lus10041059.g ID=Lus10041059.BGIv1.0 annot-version=v1.0 ATGGGTACGAGACGAGGAGCAATAAATCTGCTACAATGTTTCTTCCTGCTAGTTAATGTTTTTGTCGCTAATGCTCATGCACCTGCTTCTCAGCCACCTG CTTCTGGCCCATCTGCTTCTGGTACGCCGGCTTATGGCCCATCTGCTTCCGGCCCATCTGCTTCCGGTACGCCTGCTTCTGGTACGCCTGCTTCTGGAGG CGGAGCAGCGCCACCTATTCCTGGCGAACCAACCGTTGGCACGCCGTTCGATGTTACTAATTTCGGCGCCGTCGGTGATGGAAAGACTGATATGATGCAG GCGTTCCTGAAAGCATGGGTTAAGGCGTGTGCATCGCTGACGCCGGCGACAGTTATTGTACCAGAAGGAGAATTCTTGTGTGGGCTAGTTGTGGTGTCCG GCCCTTGCAGATCACCAATTGGAGTCCAACTTCTTGGTACAATTAACTCTCAAGATGCGATTCCGGGGAATAACTGGTTCGTGTTCAAGCGCGTCGAGAA TTTCGCACTTTTCGGGCCCGGTACAATCGACGGCAAAGGCGCCGGCAAAGTAGCCCCTAATGCAGCAAACCTAAGATTCCAGTCGATCACCAACGGAATC ATAACGGGAATAACGAGCAAAGACAGCAACTTCTTCCATATGTCGACGTTGGAGTGCAAGAACTTGACGTTCACAAAGCTCAAATTCTTTGCCCCGGCAG AAAGCGTCAACACAGACGGCATCCACCTCAGCGCTACCTGCGATGTCAACATCTTCGATGTGGACATCCAGACGGGAGACGACTGTATCTCTATGATTGA TGGAGTCTCCAACGTCCACATTACCAATGTCTGCTGTGGGCCAGGCCATGGCATTTCCGTCGGGAGCTTAGGCAAGTACGCTGACGAAAAGCCAGTCTCC GGAATCTTCGTCAAGAATTGCACTCTCAGGAAAACTGACAACGGGGTGAGGATCAAGTCATGGCCCGCACAGGAGGAAGGAGCCGCCAGCGACATCCACT TCGAGGATATTACGTTGGAAGATGTCGAAAAGCCAATCATCATCGACCAGGAGTACTGCCCTAATGGTCAATGCAAGTCCAAGGGGCCATCAAAGGTGAA AATAAGCAACATCAGCTTCAAAAATGTGCATGGGACAGTAAAGGAGGAAGAGGCAATAATAATTAAGTGCAGTAGTTTGAATCCATGCGACCAAATTGTG CTGACTGATATTGACATCACTTCCCCATCTGGCTCTGTCACATCCGAGTGCGTCAATGTCAAGCCCATCGTTACAGGGAAACCGCTGCCACCCGGTTGCA CCTAA
AA sequence Show only first row Show all	>Lus10041059 pacid=23179803 polypeptide=Lus10041059 locus=Lus10041059.g ID=Lus10041059.BGIv1.0 annot-version=v1.0 MGTRRGAINLLQCFFLLVNVFVANAHAPASQPPASGPSASGTPAYGPSASGPSASGTPASGTPASGGGAAPPIPGEPTVGTPFDVTNFGAVGDGKTDMMQ AFLKAWVKACASLTPATVIVPEGEFLCGLVVVSGPCRSPIGVQLLGTINSQDAIPGNNWFVFKRVENFALFGPGTIDGKGAGKVAPNAANLRFQSITNGI ITGITSKDSNFFHMSTLECKNLTFTKLKFFAPAESVNTDGIHLSATCDVNIFDVDIQTGDDCISMIDGVSNVHITNVCCGPGHGISVGSLGKYADEKPVS GIFVKNCTLRKTDNGVRIKSWPAQEEGAASDIHFEDITLEDVEKPIIIDQEYCPNGQCKSKGPSKVKISNISFKNVHGTVKEEEAIIIKCSSLNPCDQIV LTDIDITSPSGSVTSECVNVKPIVTGKPLPPGCT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07830			Pectin lyase-like superfamily ...		Lus10041059 [exp]	0	1

Compare expression of checked genes

Lus10041059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.