Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62280 53 / 3e-08 Protein of unknown function (DUF1442) (.1) AT3G60780 50 / 2e-07 Protein of unknown function (DUF1442) (.1) AT2G45360 50 / 2e-07 Protein of unknown function (DUF1442) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006163 [exp] 404 / 7e-145 AT5G62280 59 / 2e-10 Protein of unknown function (DUF1442) (.1) Lus10026776 [exp] 158 / 6e-50 ND / Lus10031122 [exp] 67 / 5e-13 AT5G62280 166 / 3e-51 Protein of unknown function (DUF1442) (.1) Lus10031701 [exp] 64 / 3e-12 AT5G62280 179 / 2e-56 Protein of unknown function (DUF1442) (.1) Lus10027191 [exp] 58 / 6e-10 AT5G62280 150 / 5e-45 Protein of unknown function (DUF1442) (.1) Lus10024565 [exp] 52 / 6e-08 AT2G45360 223 / 1e-73 Protein of unknown function (DUF1442) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098800 [exp] 100 / 2e-25 AT2G45360 99 / 5e-25 Protein of unknown function (DUF1442) (.1) Potri.014G069000 [exp] 76 / 1e-16 AT5G62280 147 / 6e-44 Protein of unknown function (DUF1442) (.1) Potri.012G128900 [exp] 72 / 4e-15 AT5G62280 204 / 3e-66 Protein of unknown function (DUF1442) (.1) Potri.003G115200 [exp] 67 / 2e-13 AT2G45360 238 / 9e-80 Protein of unknown function (DUF1442) (.1) Potri.015G130500 [exp] 60 / 8e-11 AT5G62280 199 / 2e-64 Protein of unknown function (DUF1442) (.1) Potri.002G147100 [exp] 59 / 2e-10 AT3G60780 269 / 4e-92 Protein of unknown function (DUF1442) (.1) Potri.014G068900 [exp] 57 / 7e-10 AT2G45360 251 / 2e-85 Protein of unknown function (DUF1442) (.1) Potri.001G117600 [exp] 56 / 3e-09 AT2G45360 226 / 2e-75 Protein of unknown function (DUF1442) (.1) Potri.002G147200 [exp] 48 / 5e-07 AT5G62280 77 / 9e-18 Protein of unknown function (DUF1442) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07279 [flax] [poplar] DUF1442 Protein of unknown function (DUF1442)
Representative CDS sequence Show only first row Show all	>Lus10041061 pacid=23179836 polypeptide=Lus10041061 locus=Lus10041061.g ID=Lus10041061.BGIv1.0 annot-version=v1.0 ATGCCTTTCTCCATGGACAACTGGTCTCCCGAGGATGCCATGAAAGCGTACTTGCACGCTCTCCACCTGAGGAAGGAGCGTGCTTTATCAATCATGGAAC CGAAGTGCATGGAGTTAGTGGCAGCTCTAGCAGCAGGGAAGAGATCAAAGTTAATGGTGGAGATAACCAAGTACTGCATCACCCCACTAACTATGGCTCT CGCCGTTGCGGCCAAGCAGACCGGCGGCAAAGTCATTGTTTACATTGCCAATGGCGGCTCTGATGATCAGGACAAAAAATGTCCTCATGATGAATTGGAG TTGATGGAGCTTGGAGATGTAGTGGAGCTTGTTTCTGATGAAGAATTAATGGTACTGAAGAAGTGTAAAGAGATTGACTTTGTGGTGGTGGATGGGGAGA TAGACAACCATATGGAGGTTATGAGGATGCTTGATGTGAACCCAGTTGGATCAATGGTGGTGGGTCACAATCTGAATAAGCAAGGGAGGAGTAAAGGTTG TTCCTTTGGAGAGGTTTTGACCAGGAATATTAATCATAACAATGGTAAGAAAAGAGGAGGAGGAGGAGGGTTTGGTTCTTCTTTTGTGAGTTTGCCGATT GGGGTTGGGATGGAGTTGACTAAGATTGGTTCTACTACCAAATTGCCTGCTGTTGGGGTTAGTAGGAAGTACAAGAGGTTTCATGTCACGTTTGAGAATT GA
AA sequence Show only first row Show all	>Lus10041061 pacid=23179836 polypeptide=Lus10041061 locus=Lus10041061.g ID=Lus10041061.BGIv1.0 annot-version=v1.0 MPFSMDNWSPEDAMKAYLHALHLRKERALSIMEPKCMELVAALAAGKRSKLMVEITKYCITPLTMALAVAAKQTGGKVIVYIANGGSDDQDKKCPHDELE LMELGDVVELVSDEELMVLKKCKEIDFVVVDGEIDNHMEVMRMLDVNPVGSMVVGHNLNKQGRSKGCSFGEVLTRNINHNNGKKRGGGGGFGSSFVSLPI GVGMELTKIGSTTKLPAVGVSRKYKRFHVTFEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62280			Protein of unknown function (D...		Lus10041061 [exp]	0	1
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10021044 [exp]	3.9	0.7031
AT5G49630		AAP6	amino acid permease 6 (.1)		Lus10028236 [exp]	8.9	0.6199
AT5G40770		ATPHB3	prohibitin 3 (.1)		Lus10027776 [exp]	13.6	0.5500
AT2G40070			unknown protein		Lus10002493 [exp]	17.2	0.6227
					Lus10001918 [exp]	25.2	0.5240
AT4G16195			Plant self-incompatibility pro...		Lus10017929 [exp]	29.7	0.5957
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10016168 [exp]	30.6	0.5957
AT1G29430			SAUR-like auxin-responsive pro...		Lus10007059 [exp]	31.5	0.5957
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10019226 [exp]	31.9	0.6407
					Lus10034545 [exp]	32.3	0.5957

Compare expression of checked genes

Lus10041061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.