Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22850 290 / 1e-97 SNARE associated Golgi protein family (.1) AT1G03260 74 / 4e-15 SNARE associated Golgi protein family (.1) AT5G19070 70 / 1e-13 SNARE associated Golgi protein family (.1) AT2G02370 53 / 9e-08 SNARE associated Golgi protein family (.1.2) AT4G22850 42 / 0.0004 SNARE associated Golgi protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006162 [exp] 326 / 3e-111 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10004421 [exp] 76 / 1e-15 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10034028 [exp] 75 / 3e-15 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10028016 [exp] 69 / 2e-13 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 66 / 3e-12 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1) Lus10012371 [exp] 60 / 4e-10 AT1G03260 274 / 1e-92 SNARE associated Golgi protein family (.1) Lus10012163 [exp] 49 / 2e-06 AT2G02370 401 / 4e-141 SNARE associated Golgi protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G071900 [exp] 294 / 2e-99 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 285 / 3e-95 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1) Potri.010G030800 [exp] 70 / 1e-13 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) Potri.008G202600 [exp] 69 / 2e-13 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1) Potri.003G151800 [exp] 49 / 2e-06 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.003G117400 [exp] 48 / 3e-06 AT1G12450 343 / 1e-118 SNARE associated Golgi protein family (.1) Potri.001G078700 [exp] 48 / 3e-06 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [flax] [poplar] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Lus10041062 pacid=23179601 polypeptide=Lus10041062 locus=Lus10041062.g ID=Lus10041062.BGIv1.0 annot-version=v1.0 ATGGCTAATTTGGTACCGGAATTAGAATATGGCCAGTTTGCCACAATCCTTGGGATAGGAGGCGAGATGATTCATATTTTGCTGGTAGTTACGGCGGTGT TCATTCGTGAGGGGGACGACAATGACGACGACGACAACGGCGAGGACGGCGGCAAAGTTGAGAGTGATGACGGCGGCGGAGATACAGCGATTAAAGGGAC GCTGCTTGCTGGGGTTTTGCTAGTCGGTGTTGTTGGTGGGTTTGGCGGCGTTGGGTATGTTTATCGGGATCAGATTAATGACTTCTTGAATCAGTTCTCT GGGTTTATTGAAGGTTACGGACCAGCTGGATATGCTATATTTGTGGCAGTATATGCAGGATTGGAAATTCTTGCACTTCCAGCAATCCCATTGACAATGA CAGCTGGACTTCTTTTTGGACCTTTGATTGGCACCATCATAGTCTCAATTAGTGGAACAGTCGCGGCCAGTGTTGCTTTTCTAATTGCTAGGTACTTTGC ACGCGAGCGAATCTTAAAACTTGTCGACGGGAATAAAAAGTTTCTTGCCATAGACAAAGCAATTGGGGAGAATAGCTTCAGAATTGTCACACTCCTTCGA TTGAGCCCTTTGCTTCCATTTTCCCTTGGAAATTATTTATATGGATTGACATCGGTCAAGTTCGTCCCGTATTTCTTTGGAAGCTGGCTCGGCATGCTTC CGGGTTCATGGGCATATGTGAGTGCTGGTGCACTTGGGCGTGCTATAATTAAAGAAGAGTCTGAGATTGGATTGCCAGAAGGAAATGGTCAGCTATTGAC ACTTGGGCTGGGATTACTAGTCACAGCATTGACTGCAGCTTACGTGACGCGGCTTGCAAAGGATGCGATAAAAGATATAGAGTAA
AA sequence Show only first row Show all	>Lus10041062 pacid=23179601 polypeptide=Lus10041062 locus=Lus10041062.g ID=Lus10041062.BGIv1.0 annot-version=v1.0 MANLVPELEYGQFATILGIGGEMIHILLVVTAVFIREGDDNDDDDNGEDGGKVESDDGGGDTAIKGTLLAGVLLVGVVGGFGGVGYVYRDQINDFLNQFS GFIEGYGPAGYAIFVAVYAGLEILALPAIPLTMTAGLLFGPLIGTIIVSISGTVAASVAFLIARYFARERILKLVDGNKKFLAIDKAIGENSFRIVTLLR LSPLLPFSLGNYLYGLTSVKFVPYFFGSWLGMLPGSWAYVSAGALGRAIIKEESEIGLPEGNGQLLTLGLGLLVTALTAAYVTRLAKDAIKDIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22850			SNARE associated Golgi protein...		Lus10041062 [exp]	0	1
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Lus10041002 [exp]	2.2	0.9278
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Lus10003640 [exp]	5.0	0.9187
AT3G11420			Protein of unknown function (D...		Lus10002713 [exp]	5.1	0.9229
AT2G33855			unknown protein		Lus10015404 [exp]	5.2	0.9140
AT2G44310			Calcium-binding EF-hand family...		Lus10035578 [exp]	5.9	0.8910
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Lus10025579 [exp]	6.9	0.9208
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10037201 [exp]	9.6	0.9192
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020417 [exp]	13.7	0.9067
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10017401 [exp]	14.1	0.9086
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	15.1	0.9178

Compare expression of checked genes

Lus10041062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.