Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64740 1723 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT2G21770 1693 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT4G39350 1686 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT5G09870 1683 / 0 CESA5 cellulose synthase 5 (.1) AT4G32410 1332 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT2G25540 1300 / 0 CESA10 cellulose synthase 10 (.1) AT5G05170 1288 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G17420 1287 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT4G18780 1142 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1) AT1G02730 753 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002939 [exp] 1940 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1939 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1914 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10028597 [exp] 1338 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 1330 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10007538 [exp] 1308 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10012198 [exp] 1307 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10039607 [exp] 1303 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10022449 [exp] 1173 / 0 AT4G18780 1286 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G087500 [exp] 1838 / 0 AT5G64740 1785 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.007G076500 [exp] 1830 / 0 AT5G64740 1790 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.002G066600 [exp] 1734 / 0 AT4G39350 1655 / 0.0 cellulose synthase A2 (.1) Potri.005G194200 [exp] 1716 / 0 AT5G64740 1665 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.013G019800 [exp] 1495 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 1455 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.018G029400 [exp] 1350 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.006G251900 [exp] 1349 / 0 AT4G32410 1899 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.001G266400 [exp] 1332 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.009G060800 [exp] 1327 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10041063 pacid=23179678 polypeptide=Lus10041063 locus=Lus10041063.g ID=Lus10041063.BGIv1.0 annot-version=v1.0 ATGAATACTGGGGGTCGGCTGATTGCTGGTTCTCACAACCGGAATGAGTTCGTCCTCATCAATGCTGATGAAAGTGGCAGAATTCAATCAGTGAGAGAAT TGAGCGGGCAGGTGTGCCAGATATGCGGAGATGAGATAGAGATTACTGCAGATGGGGAGCTTTTCGTTGCTTGCAACGAATGTGCTTTCCCAGTTTGCAG GCCTTGTTATGAATATGAGAGAAGAGAGGGGACTCAGGCTTGCCCTCAGTGCCGAACAAGATTCAAACGTCTCAAAGGCAGTGCTCGGGTTGAAGGTGAT GAAGAAGAAGATGACATTGATGATTTGGAACATGAGTTTGATTATGGTAATCTGGAAAGTTTAACCCCAGAACAAGTTACAGAGTTAATGCTTGCTGCAC GGCTTAACACTGGACGTGGATCGCAAGTCAATGGCTTTGGCACTCCCATGTCAGATCTTGATTCCTCTCCTCCTGGTGCTAAAGTTCCTCTCTTAACCTA CGGCGAGGAGGATGCTGATATTTCTTCCGATCAACACGCTCTTATTGTTCCCCCGCATTCTGGTCATGCCAACAGAGTTCATCCAATGCCTTACACTGAT CCATCTGTACCTTTGCAACCGAGACCCATGGTTCCTCAGAAAGATATAGCAGTCTATGGGTATGGGAGTGTAGCATGGAAGGACAGAATGGAAGAATGGA AGAGAAGGCAAAGTGATAAACTTCAGGTTGTCAAGCATGAAGGGGAAAATGATGGTGCAAGTTTTGACGGGAATGAACTAGATGACCCTGATTTGCCAAT GATGGATGAAGGAAGGCAGCCACTTTCAAGGAAGTTACCACTACCTTCTAGCAAGATAAGTCCATATAGGTTGATCATTGTTCTCCGTCTTGTGGTGCTG GGCTTGTTTTTCCACTATCGTATTCTCCACCCAGTCAAGGATGCATATCCCTTGTGGCTGACATCAGTTATTTGTGAGATATGGTTTGCTGTATCATGGA TTCTTGACCAGTTTCCAAAATGGTGCCCTATAGAACGAGAGACATATCTTGACCGACTTTCTTTGAGGTATGAAAAAGAAGGAAAACCATCTGAGTTAGC TAGCGTGGACATCTTTGTCAGTACAGTGGACCCCATGAAAGAACCACCATTGATCACAGCGAACACTGTTCTCTCTATTCTTGCTGTTGACTATCCTGTT GACAAGGTTGCATGCTATGTTTCTGACGATGGCGCTGCTATGCTTACGTTTGAAGCACTATCCGAGACAGCTGAATTTGCAAGGAAATGGGTCCCTTTTT GCAAAAAGTTCAATATTGAGCCTCGAGCTCCCGAGTGGTACTTCGGTCAGAAGATGGACTACTTGAAGAATAAAGTCCACCCTTCATTTGTTAGGGAAAG GCGTGCAATGAAGAGAGACTATGAAGAATTCAAGGTTAGGATCAATGGGTTGGTTTCCACCGCGCAAAAGGTTCCGGAAGATGGCTGGACGATGCAAGAT GGAACCCCATGGCCTGGAAACAGTGTGCGAGACCATCCTGGCATGATACAGGTATTCCTTGGCCATAGTGGTGTTCGTGATGTTGAAGGGAATGAGTTAC CACGGTTAGTTTATGTCTCCCGTGAGAAAAGGCCTGGATTTGATCATCATAAAAAGGCCGGGGCTATGAATTCACTGATGCGGGTCTCAGCAGTTCTATC AAATGCTCCCTATCTACTGAATGTGGATTGTGATCACTATATTAACAATAGCAAGGCACTGAGGGAAGCTATGTGCTTTATGATGGATCCAACATCAGGG AAAAGAGTTTGCTATGTACAATTCCCTCAAAGATTTGACGGCATTGATCGTCATGATAGATACTCCAATAGGAATGTAGTTTTCTTTGATATCAACATGA AAGGGTTGGATGGTTTGCAAGGACCGATTTATGTCGGTACTGGGTGTTGTTTCCGAAGACACGCACTTTATGGCTACGATGCACCTGTCACAAAAAAGCC TCCTGGAAAAACCTGCAACTGTTGGCCAAAATGGTGCTGCCTATGCTGCGGGTCCAGGAAAAATAAGAAGTCGAAGGGTAAAGACAAAAAAAATAAGTCG AAGAACAGAGAAGCATCAAAGCAAATCCATGCTCTTGAAAATATTGAAAAAGGAATACAAGCTTGGACTCCAGTGCAACCGTCCGAAGCAACCCAAACCA AATTGGAGAAGAGGTTTGGACAGTCTCCTGTCTTCATAGCTGCCACACTTATGGAAAATGGTGGAGTTCCTAGGAATGCTAGTCCTGCTTCTCTGCTCAG AGAGGCCATCCAAGTTATCAGTTGTGGTTACGAGGACAAAACTGACTGGGGAAAAGAAGTGGGCTGGATTTATGGTTCTGTTACAGAAGATATCTTGACT GGATTCAAGATGCATTGCCATGGATGGAGGTCTGTATATTGTATTCCCAAAAGGCCTGCATTTAAAGGGTCAGCTCCCATCAATCTGTCCGATCGTCTTC ATCAAGTTCTTCGATGGGCTCTTGGTTCAGTTGAGATTTTCTTCAGCAAACATTGTCCAATTTGGTATGGATATGGGGGCGGACTCAAGTGGTTGGAACG ATTTTCGTATATCAACTCTGTTGTGTACCCTTGGACTTCGATTCCCCTCTTGGTTTACTGTACCCTGCCAGCTATCTGCCTTCTCACTGGGAAATTCATC GTGCCCGAGATTAGCAACTATGCAAGTCTTGTGTTCATGGCGCTTTTCATATCCATTGCTGCAACTAGTATCCTTGAGATGCAATGGGGCAAAGTTGGAT TAGATGACATGTGGAGGAATGAGCAGTTTTGGGTTATTGGAGGTGTTTCATCCCATTTCTTTGCTCTCTTCCAAGGTCTGCTCAAGGTTCTAGCCGGAGT AAGCACAAACTTCACGGTCACTTCAAAAGCAGCCGATGATGGAGAGTTCTCAGAGCTTTACATATTCAAGTGGACTTCACTCTTGATCCCTCCCACAACT CTGTTGATCATGAACGTGATAGGAGTCATCGTTGGTATCTGTGACGCCATCAATAATGGGTACGACTCGTGGGGTCCGTTGTTCGGCAGGCTATTCTTTG CCATCTGGGTTATTGTCCACCTCTATCCCTTCCTCAAAGGTCTCCTCGGGAAGCAAGACCGCATGCCTACCATCATTGTGGTGTGGTCTATTCTTCTATC CTCGATTCTAACGCTACTGTGGGTTCGAGTAAACCCATTTGTGAATCGAAGTGGACCTGTGTTGGAGGTTTGCGGGTTGAATTGCGATTGA
AA sequence Show only first row Show all	>Lus10041063 pacid=23179678 polypeptide=Lus10041063 locus=Lus10041063.g ID=Lus10041063.BGIv1.0 annot-version=v1.0 MNTGGRLIAGSHNRNEFVLINADESGRIQSVRELSGQVCQICGDEIEITADGELFVACNECAFPVCRPCYEYERREGTQACPQCRTRFKRLKGSARVEGD EEEDDIDDLEHEFDYGNLESLTPEQVTELMLAARLNTGRGSQVNGFGTPMSDLDSSPPGAKVPLLTYGEEDADISSDQHALIVPPHSGHANRVHPMPYTD PSVPLQPRPMVPQKDIAVYGYGSVAWKDRMEEWKRRQSDKLQVVKHEGENDGASFDGNELDDPDLPMMDEGRQPLSRKLPLPSSKISPYRLIIVLRLVVL GLFFHYRILHPVKDAYPLWLTSVICEIWFAVSWILDQFPKWCPIERETYLDRLSLRYEKEGKPSELASVDIFVSTVDPMKEPPLITANTVLSILAVDYPV DKVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKFNIEPRAPEWYFGQKMDYLKNKVHPSFVRERRAMKRDYEEFKVRINGLVSTAQKVPEDGWTMQD GTPWPGNSVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLMRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSG KRVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCCFRRHALYGYDAPVTKKPPGKTCNCWPKWCCLCCGSRKNKKSKGKDKKNKS KNREASKQIHALENIEKGIQAWTPVQPSEATQTKLEKRFGQSPVFIAATLMENGGVPRNASPASLLREAIQVISCGYEDKTDWGKEVGWIYGSVTEDILT GFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSKHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCTLPAICLLTGKFI VPEISNYASLVFMALFISIAATSILEMQWGKVGLDDMWRNEQFWVIGGVSSHFFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTT LLIMNVIGVIVGICDAINNGYDSWGPLFGRLFFAIWVIVHLYPFLKGLLGKQDRMPTIIVVWSILLSSILTLLWVRVNPFVNRSGPVLEVCGLNCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10041063 [exp]	0	1
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10028348 [exp]	2.0	0.8985
AT4G03560		FOU2, ATCCH1, A...	FATTY ACID OXYGENATION UPREGUL...		Lus10018594 [exp]	2.4	0.8864
AT4G30020			PA-domain containing subtilase...		Lus10001310 [exp]	3.0	0.8777
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10000803 [exp]	3.9	0.8644
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	4.5	0.8768
AT4G24610			unknown protein		Lus10000766 [exp]	5.7	0.9030
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Lus10032251 [exp]	6.8	0.8572
AT3G01810			unknown protein		Lus10041590 [exp]	8.4	0.8654
AT5G22740		ATCSLA2, ATCSLA...	CELLULOSE SYNTHASE-LIKE A 2, A...		Lus10020539 [exp]	9.7	0.8177
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10006161 [exp]	9.8	0.8745

Compare expression of checked genes

Lus10041063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.