Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33590 461 / 9e-161 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 379 / 8e-129 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 379 / 2e-128 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 368 / 2e-124 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 356 / 6e-120 Leucine-rich repeat (LRR) family protein (.1) AT1G33612 352 / 1e-118 Leucine-rich repeat (LRR) family protein (.1) AT5G23400 189 / 2e-54 Leucine-rich repeat (LRR) family protein (.1) AT5G12940 157 / 6e-44 Leucine-rich repeat (LRR) family protein (.1) AT3G20820 155 / 1e-43 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 149 / 6e-41 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002936 [exp] 561 / 0 AT1G33590 594 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002937 [exp] 511 / 1e-180 AT1G33590 559 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10006159 [exp] 312 / 2e-106 AT1G33590 179 / 1e-54 Leucine-rich repeat (LRR) family protein (.1) Lus10006160 [exp] 188 / 4e-59 AT1G33590 141 / 4e-41 Leucine-rich repeat (LRR) family protein (.1) Lus10041010 [exp] 174 / 4e-49 AT5G23400 557 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10041013 [exp] 172 / 3e-48 AT5G23400 552 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10031824 [exp] 158 / 2e-44 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10013454 [exp] 161 / 4e-44 AT5G23400 536 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 147 / 5e-40 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G098900 [exp] 490 / 3e-172 AT1G33590 582 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.013G098850 [exp] 484 / 5e-170 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 184 / 2e-52 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.007G016700 [exp] 184 / 3e-52 AT5G46330 286 / 5e-84 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G117700 [exp] 184 / 5e-52 AT3G24240 240 / 1e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G269800 [exp] 149 / 3e-41 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.009G064300 [exp] 149 / 3e-41 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G017500 [exp] 148 / 9e-41 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 147 / 2e-40 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.006G237400 [exp] 149 / 5e-39 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041064 pacid=23179994 polypeptide=Lus10041064 locus=Lus10041064.g ID=Lus10041064.BGIv1.0 annot-version=v1.0 ATGAACTCCCTCTTCCTCTTCCTCTCCTTGCTTACCCTCCAATGCCTCCTAGCCACATCACGTGTCTGTCACGTGGATGACGAATCGGGTCTCTTATCAT TCAAATTGGGCATCACCCACGACCCGTCCGGTATGCTCTCCTCGTGGAAGCCCGGTACCGATTGTTGCACTTGGGTAGGGATAACTTGTCTTTACAACGA CCGAGTCACCGCCCTCTCGTTCTATGGCCAACTCGACAAACCCGATAGCTTCCTCTCTGGTACCATCTCACCGTCCCTTGCTAAGCTCAGGGACCTCGAC GGTATATACCTCGAAAGGACGAGAAACATTTCAGGTAACTTCCCAGTCTTTTTGTACGGAATGCCCAAACTTCAATACGTTTACATGGGATATAACCAGC TCTCCGGTCGAATACCCACCGATATCGGCAAGTTAGGAGCACAACTCTACGCGCTAGACCTCCAAGGAAACCGGTTCACTGGCTCAGTCCCCGCATCCAT ATCCGAATTAATCGGTTTGAGCCAGTTGAACCTTGCCAACAACTTCATCACTGGAAAAATCCCAAACGGAATCCGCAACCTGAAAAACCTGACATTAATA GACCTCCAGAATAACCAGCTCTCCAGATTCATTCCTGAAATCTTCTCGTCCCTCACTCAGCTATGGAGGCTCAATCTTTCTAGTAACCAATTTTCCGGGG GAATCCCTGCTTCCATTTCTTCAATTTCCCGAACGTTAATGTACCTTGACCTAAGCCACAATTTGCTAACCGGTGAAATCCCTAGTTACCTGGGGAAATT TCAAGCGCTCGACACTCTGAACCTTGCCTGGAACAATCTGACAGGACCGATCCCAGCGAGTTTCAAGAATCTGACCAAGATCTTCAATCTAGACCTTTCC CACAATTCCCTCGTCAATCCATTCCCTGTTATGAACGTCAGAGGGATCGAGTCGCTGGATCTCTCGTACAACAAATTCCGTCTGGGGAAAATCCCCAATT GGGTGACGTCGTCTCCGATCATCTACTCCCTGAAGCTGGCGAAATGCGGGATCAAGATTAACCTGACGAATTGGAAGCCCAAGAAGACGTACTTCTATGA CTTCATCGATTTGTCAGAGAATCAGATATCTGGGAGTCCGGTTACGCTGCTGAACCGGACCGGTTACCTGGTGGAGTTTGGGGCTGGTAGCAATAGATTG AGTTTTGATTTGAGGTGGTAA
AA sequence Show only first row Show all	>Lus10041064 pacid=23179994 polypeptide=Lus10041064 locus=Lus10041064.g ID=Lus10041064.BGIv1.0 annot-version=v1.0 MNSLFLFLSLLTLQCLLATSRVCHVDDESGLLSFKLGITHDPSGMLSSWKPGTDCCTWVGITCLYNDRVTALSFYGQLDKPDSFLSGTISPSLAKLRDLD GIYLERTRNISGNFPVFLYGMPKLQYVYMGYNQLSGRIPTDIGKLGAQLYALDLQGNRFTGSVPASISELIGLSQLNLANNFITGKIPNGIRNLKNLTLI DLQNNQLSRFIPEIFSSLTQLWRLNLSSNQFSGGIPASISSISRTLMYLDLSHNLLTGEIPSYLGKFQALDTLNLAWNNLTGPIPASFKNLTKIFNLDLS HNSLVNPFPVMNVRGIESLDLSYNKFRLGKIPNWVTSSPIIYSLKLAKCGIKINLTNWKPKKTYFYDFIDLSENQISGSPVTLLNRTGYLVEFGAGSNRL SFDLRW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10041064 [exp]	0	1
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	4.0	0.9176
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030460 [exp]	4.2	0.9345
AT1G33670			Leucine-rich repeat (LRR) fami...		Lus10041065 [exp]	4.6	0.9146
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	4.7	0.9419
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10034374 [exp]	5.3	0.9332
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	8.0	0.9383
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	12.5	0.9197
AT4G38260			Protein of unknown function (D...		Lus10016024 [exp]	12.6	0.9222
					Lus10003802 [exp]	14.1	0.9316
AT5G51970			GroES-like zinc-binding alcoho...		Lus10027409 [exp]	16.2	0.9223

Compare expression of checked genes

Lus10041064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.