Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21195 75 / 1e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000194 [exp] 226 / 8e-78 AT2G21195 97 / 5e-27 unknown protein Lus10006157 [exp] 104 / 6e-27 AT5G09360 533 / 0.0 laccase 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G071800 [exp] 127 / 9e-39 AT2G21195 99 / 4e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041068 pacid=23179782 polypeptide=Lus10041068 locus=Lus10041068.g ID=Lus10041068.BGIv1.0 annot-version=v1.0 ATGGAGCCGTCAAATTCAAAACTCGCCATAGCCGTTCCTTCGAGACGGCCTTCCAGGCGCCTCTTGTTCGATCGTCGCTATGGATGGGTGGTGGATGAAT GGAAGCACCCATCAGAGGAAGCTTTGGCCGGCGGCCGTGGAATGTTCTGCATAGTGCCTCTAGCAAAAGCATGCTGGAATATGGCTTCCAAGTCGATAGA TGCTGCATCAAATTGTGTAGTCGAAGTCGTTCAAAGGCCAGATCTTTTGTCTCCTCAGGCAATTCAGGCGACTCTGAAAACTCAGTTGTCCAGATTCCAG TCTTCCCTGTGCAACTCTGAGCTCAACCTGCTTGTAAGAGACTCTAAATCCCGTTCTCCTGAATTGCCAAATTCACATATAAAATTGGAGAACAATGCAG CACAGACAAATTAA
AA sequence Show only first row Show all	>Lus10041068 pacid=23179782 polypeptide=Lus10041068 locus=Lus10041068.g ID=Lus10041068.BGIv1.0 annot-version=v1.0 MEPSNSKLAIAVPSRRPSRRLLFDRRYGWVVDEWKHPSEEALAGGRGMFCIVPLAKACWNMASKSIDAASNCVVEVVQRPDLLSPQAIQATLKTQLSRFQ SSLCNSELNLLVRDSKSRSPELPNSHIKLENNAAQTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21195			unknown protein		Lus10041068 [exp]	0	1
AT3G05675			BTB/POZ domain-containing prot...		Lus10021269 [exp]	5.2	0.7701
AT5G60335			Thioesterase superfamily prote...		Lus10028483 [exp]	13.7	0.7630
AT4G37020			unknown protein		Lus10000435 [exp]	17.5	0.7656
AT1G55170			unknown protein		Lus10041450 [exp]	17.9	0.7352
AT1G76405			unknown protein		Lus10025161 [exp]	21.9	0.7587
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10042038 [exp]	28.0	0.7543
AT2G28230			TATA-binding related factor (T...		Lus10030654 [exp]	30.9	0.7618
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Lus10026522 [exp]	32.2	0.7388
AT1G32070		ATNSI	nuclear shuttle interacting (....		Lus10035604 [exp]	32.7	0.7485
AT5G25800			Polynucleotidyl transferase, r...		Lus10028637 [exp]	38.0	0.7370

Compare expression of checked genes

Lus10041068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.