Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27000 654 / 0 ATARP2, WRM, ARP2 WURM, actin related protein 2 (.1) AT3G18780 280 / 1e-91 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT5G09810 280 / 1e-91 ACT2/7, ACT7 actin 7 (.1) AT1G49240 280 / 1e-91 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G12110 278 / 6e-91 ACT11 actin-11 (.1) AT2G42100 278 / 8e-91 Actin-like ATPase superfamily protein (.1) AT3G53750 276 / 5e-90 ACT3 actin 3 (.1) AT2G37620 276 / 5e-90 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT3G46520 271 / 5e-88 ACT12 actin-12 (.1) AT5G59370 270 / 2e-87 ACT4 actin 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006156 [exp] 694 / 0 AT3G27000 759 / 0.0 WURM, actin related protein 2 (.1) Lus10005819 [exp] 280 / 1e-91 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 280 / 1e-91 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006783 [exp] 280 / 1e-91 AT5G09810 778 / 0.0 actin 7 (.1) Lus10016558 [exp] 277 / 2e-90 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 277 / 2e-90 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005457 [exp] 277 / 2e-90 AT3G12110 768 / 0.0 actin-11 (.1) Lus10001694 [exp] 276 / 4e-90 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005163 [exp] 276 / 4e-90 AT3G12110 766 / 0.0 actin-11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326600 [exp] 663 / 0 AT3G27000 758 / 0.0 WURM, actin related protein 2 (.1) Potri.001G309500 [exp] 280 / 1e-91 AT5G09810 775 / 0.0 actin 7 (.1) Potri.019G010400 [exp] 280 / 2e-91 AT5G09810 774 / 0.0 actin 7 (.1) Potri.010G204300 [exp] 278 / 6e-91 AT3G12110 733 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 278 / 6e-91 AT3G12110 765 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 278 / 1e-90 AT3G12110 767 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 278 / 1e-90 AT3G12110 767 / 0.0 actin-11 (.1) Potri.001G453600 [exp] 276 / 4e-90 AT5G09810 769 / 0.0 actin 7 (.1) Potri.011G148000 [exp] 270 / 6e-88 AT5G09810 731 / 0.0 actin 7 (.1) Potri.006G139900 [exp] 263 / 1e-84 AT5G09810 554 / 0.0 actin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10041069 pacid=23179718 polypeptide=Lus10041069 locus=Lus10041069.g ID=Lus10041069.BGIv1.0 annot-version=v1.0 ATGGCTATCTGCATTCTGTTTCAGTATGTAAAGTGTGGATTTGCTGGAGAGAATTTCCCCACTTCTGTATTCCCATGTGTGGTTGGGAGGCCCATGCTTC GATATGAGGAATCACTAATGGAACAACAATTAAAGGATATTGTTGTCGGAGAGTCCTGCGCAGAATTGAGACATCAACTAGACATTTCTTATCCTGTGAA CAACGGAATCATCCAAAATTGGGATGACATGGGACATGTTTGGGATCATGCATTCTACAGTGAACTTAAAATAGACCCAGCCGAATGCAAGATTCTGCTC ACTGACCCGCCTCTGAATCCCAAAAAGAATCGTGAATTGATGATTGAGACCATGTTTGAGAAGTATAATTTTGCTGGTGTGTTCATTCAAATCCAAGCAG TGTTAACATTGTACGCCCAAGGTTTGTTAACTGGACTAGTCATCGACTCTGGTGATGGTGTAACTCATGTGGTTCCTGTTGTCGATGGTTTCTCGTTTCC TCCTCTTACAAAGAGGAGGTATGTTGCTGGTCGGCACATAACATCGTATCTGATTGATCTTCTCTCACGGAGAGGTTATGATTACAAGAGAGAATACCAG CTCGGACTTGAGACTACCATTCTTGTTAAGCATTATACCCTGCCAGATGGAAGAACCATTAAAGTAGGGACAGAACGGTTTCAAGCACCTGAGGCTCTTT TTACACCTATAGTTGGTCATGGAACACCGGCAAGGATCTCGCTTGGCATAAGTAGGGCTGATTGTTTTAGAGTTCTTGAAGAACTTATAGATGTTGAAGG TGACGGAATGGCTGATATGGTATTCCGCTGCATCCAGGAAATGGATATTGACAACAGAATGATGCTATACCAGCATATTGTGTTGAGTGGTGGAAGCACC ATGTACCCCGGCCTGCCTAGCCGCTTGGAGAAGGAAATACAGGATCGGTACCTTGATGCTGTTCTGAAGGGAAACAAAGATGGATTGAAGAAATTGCGAC TAAGGATTGAGGATCCACCACGAAGAAAGCATATGGTATACTTAGGAGGTGCAGTTCTTGCTGGAATTATGAAGGATGCACCTGAGTTCTGGATCAGCAG GGAAGATTATCTAGAAGAAGGTATCGATTGCCTAAACAAGTGTGGTCAAGCTTGA
AA sequence Show only first row Show all	>Lus10041069 pacid=23179718 polypeptide=Lus10041069 locus=Lus10041069.g ID=Lus10041069.BGIv1.0 annot-version=v1.0 MAICILFQYVKCGFAGENFPTSVFPCVVGRPMLRYEESLMEQQLKDIVVGESCAELRHQLDISYPVNNGIIQNWDDMGHVWDHAFYSELKIDPAECKILL TDPPLNPKKNRELMIETMFEKYNFAGVFIQIQAVLTLYAQGLLTGLVIDSGDGVTHVVPVVDGFSFPPLTKRRYVAGRHITSYLIDLLSRRGYDYKREYQ LGLETTILVKHYTLPDGRTIKVGTERFQAPEALFTPIVGHGTPARISLGISRADCFRVLEELIDVEGDGMADMVFRCIQEMDIDNRMMLYQHIVLSGGST MYPGLPSRLEKEIQDRYLDAVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWISREDYLEEGIDCLNKCGQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Lus10041069 [exp]	0	1
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10015525 [exp]	1.4	0.8982
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10014349 [exp]	5.7	0.8746
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10039569 [exp]	6.6	0.8635
AT5G27490			Integral membrane Yip1 family ...		Lus10015189 [exp]	11.3	0.8534
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	14.3	0.8522
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10025293 [exp]	14.6	0.8900
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Lus10042923 [exp]	15.3	0.8743
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Lus10006238 [exp]	16.9	0.8593
AT2G40120			Protein kinase superfamily pro...		Lus10028283 [exp]	19.1	0.8708
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	20.8	0.8609

Compare expression of checked genes

Lus10041069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.