Plant FIBer expression Database

Lus10041070 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31580 587 / 0 tRNAHis guanylyltransferase (.1)
AT2G32320 586 / 0 tRNAHis guanylyltransferase (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022302
[exp]
253 / 5e-79 AT1G17860 176 / 4e-54 Kunitz family trypsin and protease inhibitor protein (.1)
Lus10006155
[exp]
225 / 1e-69 AT2G31580 128 / 5e-34 tRNAHis guanylyltransferase (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G233300
[exp]
628 / 0 AT2G32320 737 / 0.0 tRNAHis guanylyltransferase (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04446 Thg1 tRNAHis guanylyltransferase
Representative CDS sequence
>Lus10041070 pacid=23179801 polypeptide=Lus10041070 locus=Lus10041070.g ID=Lus10041070.BGIv1.0 annot-version=v1.0
ATGGCTAATAGTAAATATGAGTACGTCAAGTCATTTGAAATGGAAGACGAGATTGCATTCCCCAATATCATTGTTCTTCGAGTTCAAGTTCGTGACTTTT
TAAGGTTCTGTAAATCTCATGATCTAAGAAGGCCGTATGATGAAAAAGCCTTGGATTTGATGAACTTATGCGCCGAGTCTGTTCTTAGACAGTATCCAGA
TATAGTGTTTTCATATGGATTCAATGATGAACACAGTTTTGTCTTCAAGAAGAAAACCAAGTTCCATGAGAGGCGAGCCAGCAAAATTTTATCCATCGTT
ACGTCATGTTTCACTTCAGTATTTGTCAACAAGTGGAAAGATCTTTTCTCAGATAGAGAACTGAGATATCCACCTTCATTTAATGGGCGAGTTATTGTTT
GTGCAACTATAGATGTTCTCCAACATTATCTTGCATGGAGACAAAATGAGTGTTATGTAACTAATCAGTATAGTGCTTGTTTTTGGGCATTGGTTAGCCA
TGGAAGAAGCGAGAAGGAAGCTGAAGAGATTTTAAAGGGTTCAAAGAAACAAGAGCTAAATGAGATACTTCATCAGCAGTTCAATATCAATTACAATAAT
CTTCCGAAGATATTCCGCTGGGGTTCTTGCATCCTAGTTATGGAGGTGGAAACTATTGTAAAATACAATAAGGATGGGTCTCCTATACCAAGATTGAGAA
AACAGATATCAACAGTACATTCCCAGGATATTTCTAGAAGAAACTTTTGGAATGATAAGCCACATCTTATCAAAGAATTGGGTGCATTTGTGGCAGATAT
CACAAGAATTGACAAAGACTACGTCAAGTATTTCCAATCTGAAAATAAGCTGATGCCATATACATGGGCTGTTGTAAGAGTTGATGGCTGTCATTTCCAC
AAATTTTCTGAAGTTCACAAGTTTGAGAAGCCAAATGATGTACAAGCTTTGAAGTTAATGAATGAATGTGCTGTTTGTGTTTTGGAGGAGTTCGATGAAG
TTGTGTTCTCATATGGTGTCAGTGATGAGTACAGCTTTATATTGAAGAGAAGTTGTCACCTTCATAGAATCCATCCTAGCGACATTGTTTCTTCCGTTGT
ATCATTATTTACCTCTATGTACGTGATGAAATGGAAGACTTTCTTTCCATTGATAGATCTGCATTCTCTCCCTTCTTTTGATGGAAGGGTCGTCTGCTAT
CCATCATTAGAAATCTTGCGAGATTACCTATCGTGGAGGCAAGTCGATTGCCATATAAACAACCAGTATAATACTTGTTTCTGGATGCTGGTTAAGTCGG
GAAAAAGTAGAAGCGAAGCACAGCAGATATTGAAGGTGCTCACTTCCTCTTTCTTTTCTGGACAACTTGATCCTGCAGCTAGCTATTTGTCATGCTTTGA
TAAAATGCATGTTATCATCAGGACGTTTGTTGGGGTAGGGGGTAGGATCGGAAATTATTCTTTATCACCTGGCCGGATGCGAATTTTGGCGACACCTCTG
CTGAAAAAACTATCACTTACGAAAGATTTGTTGACGGTGCTTGATAACCACATTCCCTTGGGTACTCAAACACAAGATAAAATGGAACTGCTGGCAACTA
AATTTGGTATCGACTACAATGGTATAGGGGAAATGTTACGCCTTGGTTCCTCTGTTTTTCGGGAAGAGGAGAATGGATGTAGCAGGATAGTTATAGAGCA
CTGTAATATAATTGATGATGGCTTCTGGAAGGCTCACGCATACATCTTAGGCTTATAG
AA sequence
>Lus10041070 pacid=23179801 polypeptide=Lus10041070 locus=Lus10041070.g ID=Lus10041070.BGIv1.0 annot-version=v1.0
MANSKYEYVKSFEMEDEIAFPNIIVLRVQVRDFLRFCKSHDLRRPYDEKALDLMNLCAESVLRQYPDIVFSYGFNDEHSFVFKKKTKFHERRASKILSIV
TSCFTSVFVNKWKDLFSDRELRYPPSFNGRVIVCATIDVLQHYLAWRQNECYVTNQYSACFWALVSHGRSEKEAEEILKGSKKQELNEILHQQFNINYNN
LPKIFRWGSCILVMEVETIVKYNKDGSPIPRLRKQISTVHSQDISRRNFWNDKPHLIKELGAFVADITRIDKDYVKYFQSENKLMPYTWAVVRVDGCHFH
KFSEVHKFEKPNDVQALKLMNECAVCVLEEFDEVVFSYGVSDEYSFILKRSCHLHRIHPSDIVSSVVSLFTSMYVMKWKTFFPLIDLHSLPSFDGRVVCY
PSLEILRDYLSWRQVDCHINNQYNTCFWMLVKSGKSRSEAQQILKVLTSSFFSGQLDPAASYLSCFDKMHVIIRTFVGVGGRIGNYSLSPGRMRILATPL
LKKLSLTKDLLTVLDNHIPLGTQTQDKMELLATKFGIDYNGIGEMLRLGSSVFREEENGCSRIVIEHCNIIDDGFWKAHAYILGL

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G31580 tRNAHis guanylyltransferase (.... Lus10041070
[exp]
0 1
AT3G12280 RB1, RBL1, RBR1... RETINOBLASTOMA 1, RETINOBLASTO... Lus10026154
[exp]
3.6 0.8533
AT3G60500 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuc... Lus10009708
[exp]
7.5 0.8090
AT1G09010 glycoside hydrolase family 2 p... Lus10029917
[exp]
8.9 0.8138
AT2G03070 MED8 mediator subunit 8 (.1) Lus10037308
[exp]
9.4 0.8223
AT3G12280 RB1, RBL1, RBR1... RETINOBLASTOMA 1, RETINOBLASTO... Lus10008667
[exp]
10.7 0.8345
AT3G54670 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE... Lus10022923
[exp]
12.3 0.8070
AT2G23380 SET1, SDG1, ICU... SETDOMAIN 1, SETDOMAIN GROUP 1... Lus10009369
[exp]
14.4 0.8337
AT5G46560 unknown protein Lus10003015
[exp]
15.8 0.7543
AT5G63200 tetratricopeptide repeat (TPR)... Lus10013661
[exp]
20.1 0.7699
AT3G20550 FHA DDL DAWDLE, SMAD/FHA domain-contai... Lus10004278
[exp]
22.6 0.7851

Lus10041070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.