Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19710 1368 / 0 AK-HSDHII, AK-HSDH ,AK-HSDH II aspartate kinase-homoserine dehydrogenase ii (.1.2) AT1G31230 1334 / 0 AK-HSDHI ,AK-HSDH I aspartate kinase-homoserine dehydrogenase i (.1) AT5G21060 185 / 2e-51 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) AT5G14060 156 / 4e-40 CARAB-AK-LYS Aspartate kinase family protein (.1.2) AT3G02020 145 / 2e-36 AK3 aspartate kinase 3 (.1) AT5G13280 144 / 6e-36 AK1, AK-LYS1 aspartate kinase 1 (.1) AT3G18680 44 / 0.0006 Amino acid kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030339 [exp] 1704 / 0 AT4G19710 1415 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Lus10003073 [exp] 185 / 2e-51 AT5G21060 553 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Lus10034077 [exp] 182 / 3e-50 AT5G21060 561 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Lus10041523 [exp] 155 / 2e-39 AT5G14060 824 / 0.0 Aspartate kinase family protein (.1.2) Lus10012568 [exp] 155 / 2e-39 AT5G14060 820 / 0.0 Aspartate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G071700 [exp] 1475 / 0 AT4G19710 1470 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.013G099500 [exp] 1444 / 0 AT4G19710 1425 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.004G196200 [exp] 182 / 2e-50 AT5G21060 509 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Potri.014G145700 [exp] 155 / 1e-39 AT5G14060 805 / 0.0 Aspartate kinase family protein (.1.2) Potri.002G236800 [exp] 154 / 4e-39 AT3G02020 845 / 0.0 aspartate kinase 3 (.1) Potri.005G057700 [exp] 43 / 0.0007 AT3G18680 467 / 1e-166 Amino acid kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03447 [flax] [poplar] NAD_binding_3 Homoserine dehydrogenase, NAD binding domain CL0070 [flax] [poplar] ACT PF01842 [flax] [poplar] ACT ACT domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF00742 [flax] [poplar] Homoserine_dh Homoserine dehydrogenase CL0139 [flax] [poplar] PF00696 [flax] [poplar] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Lus10041071 pacid=23179872 polypeptide=Lus10041071 locus=Lus10041071.g ID=Lus10041071.BGIv1.0 annot-version=v1.0 ATGGCGTTCGCAGCCTCGATCTCCGCCGCCACCTCTCGCCTCCTCTCATCCACTGCATTGCCTCGCGATTCCCTCAAGGAGAAAAACAATCAGAAGACCT CCCTCCCTTCTTATCTGTCTCTTCTCCATCCTGGCTCCTCTGCCTTCAGACCAGGGAATGTTCTTCCTCGTGGAAGAAAGGAGTCGTCTCGGAGCCATGC TGCTTCTTCTGCTGCTAAAGCTGTTTTACTGGATGAATCCAAGGAAAAGGTTCAACAGCATAAGAGTACTTCCTGGTCAGTCCATAAGTTTGGGGGCACC TGTGTTGGAAGTTCCGAAAGGATAAAGAATGTGGCAGAGATTATTGCTAATGACTCCTCCGAAGGGAAGTTTGTGGTGGTGTCAGCAATGTCAAAGGTGA CGGATATGATGTATGACTTGATCAATAGGGCGCAGTCGAGAGATGAATCGTTTGTTGCTGCTGCTGATGCTGTATTCGAGAAGCATAGGTTAACAGCTAC AGATCTTCTAGAAGGAGATGATCTTGCTGCATTTTTGTCACGGTTGCATCACGATATCACCAACCTTAAAGCCATGCTCCGTGCCATATATATAGGACAT GGAGAGTTGTGGTCTGCTCAGCTGCTGTCCTATGTTGTGAAGAAGGTGGAGTATTTTATTGCTTGTTTTAATGGACTTGATTGCAAATGGATGGATACAA GAGATGTTCTTATTGTCAACCCTGTTAGTTCTATTCAAGTTGACCCAGATTATGTCGAATCTGAAAGGAGACTTGAACAATGGTTCACTCAAAATCCATC CAAGGCGATTGTTGCTACTGGTTTCATAGCCAGCACACCTCAAAACATTCCAACAACTTTGAAGAGGGATGGTAGTGACTTCTCTGCCGCTATAATGGGT GCATTGTTGAGGGCCGCACAAGTGACTATATGGACGGATGTTGATGGGGTCTATAGTGCAGACCCTAGGAAAGTTAGCGAGGCTGTGATCTTGAAGACCC TGTCCTACCAAGAAGCTTGGGAAATGGTCCCTGTGATTCTGCAGTCATATTTTGGGGCAAATGTTTTGCATCCTCGAACGATAATTCCAGTGATGCGGTA TGACATTCCAATTGTCATAAGGAATATTTTCAACCTATCCGCACCGGGCACCATGATATGTAGACCTTCAACTAGTGAGGAGGAGCATGGTCAAATTACA GATTTCCCTGTGAGAGGGTTTGCAACAGTAGACAATGTCGCTCTTGTGAATGTTGAAGGGACGGGAATGGCTGGTATCCCTGGTACAGCTAGTGCTATCT TTGGTGCTGTCAAAGATGTGGGTGCTAATGTTATCATGATATCACAGGCTAGTAGTGAACATTCTGTTTGCTTTGCCGTGCCCGAGAAGGAAGTCAAAGC TGTTGCAGATGCTTTAAAATCCAGATTTCGTGAAGCTCTAAATGCTGGACGTCTTTCAAAGGTTGCAGTCATTCCAAATTGTAGCATTCTGGCTGCTGTG GGTCAGAAAATGGCTAGCACGCCTGGTGTCAGTGCTACTCTTTTCAATGCCCTAGCTAAGGCAAATATTAATGTACGTGCCATAGCTCAAGGTTGTTCCG AGTATAACATCACGGTAGTCGTCAAGCGTGAAGATTGTGTAAGGGCACTAAGAGCTGCTCACTCCAGATTTTATCTCTCGGAGACAACAATATCAGTGGG CATTGTTGGACCTGGTTTGATAGGTGCCACATTACTTGACCAGCTTAGAGATCAGGCAGCAGTTCTGAAAGAAGACTTCAACATCGAGCTGCGTGTTATG GGCATCACTGGCTCAAGGACAATGCTTTTGAGTAATTCTGGGATTGACCTGTCAAGATGGAGAGAACTTATGAAATCGAAAGGAGAAGTCACTGATCTGG AGAAATTCACGTATCATGTTCAAGGAAATCATTTTATCCCAAATACTGTCTTGGTAGATTGCACGGCGGATGCTGCAATTGCTAGCCATTACTATGATTG GCTACGAAAAGGAATCCATGTTGTTACTCCAAACAAAAAGGCAAATTCAGGGCCACTTGATCAGCTCAGAGCGCTTCAGAGGCAATCATACACACATTAC TTCTACGAGGCAACTGTTGGAGCAGGCCTCCCAATTATCAGCACTTTAAGAGGTCTCCTTGAAACTGGGGATAAGATACTTGAAATTGAAGGCATTTTCA GTGGTACTTTGAGTTATATCTTCAACAACTTTGTGGGGGATCGAGCATTTAGCGATGTAGTGTCAGAGGCAAAGAAGAAAGGTTATACGGAACCGGATCC AAGGGATGATCTGTCTGGAACAGATGTTGCTCGAAAGGTCATAATCCTTGCAAGAGAATCTGGTTTGAAGTTAGAACTTGCTGATATCCCTGTACAAAGT CTAGTTCCAGAGCCCCTCAGAGCAAGTGCATCTGCTGATGAGTTCATGAAGCAGCTGCCCGAGTTCGACCAAGACATAGCCAATGAACGACGAGCTGCTG AGGCTGACGGGGATGTGTTGAGATACGTTGGAGTGGTAGATGTCATACGAGCAGAAGGACGAGTAGAACTGAGAAGATACAAGAAAGATCACGCATTTGC TCAGCTTTCTGGGTCGGACAACATCATAGCATTCACAACAAGTAGATACAAGGAACAGCCATTGATAGTGCGAGGACCAGGTGCAGGTGCTCAAGTCACT GCAGCTGGTGTGTTCAGCGACATTCTGCGGCTAGCTTCCTACCTTGGAGCTCCATCATAA
AA sequence Show only first row Show all	>Lus10041071 pacid=23179872 polypeptide=Lus10041071 locus=Lus10041071.g ID=Lus10041071.BGIv1.0 annot-version=v1.0 MAFAASISAATSRLLSSTALPRDSLKEKNNQKTSLPSYLSLLHPGSSAFRPGNVLPRGRKESSRSHAASSAAKAVLLDESKEKVQQHKSTSWSVHKFGGT CVGSSERIKNVAEIIANDSSEGKFVVVSAMSKVTDMMYDLINRAQSRDESFVAAADAVFEKHRLTATDLLEGDDLAAFLSRLHHDITNLKAMLRAIYIGH GELWSAQLLSYVVKKVEYFIACFNGLDCKWMDTRDVLIVNPVSSIQVDPDYVESERRLEQWFTQNPSKAIVATGFIASTPQNIPTTLKRDGSDFSAAIMG ALLRAAQVTIWTDVDGVYSADPRKVSEAVILKTLSYQEAWEMVPVILQSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSAPGTMICRPSTSEEEHGQIT DFPVRGFATVDNVALVNVEGTGMAGIPGTASAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVADALKSRFREALNAGRLSKVAVIPNCSILAAV GQKMASTPGVSATLFNALAKANINVRAIAQGCSEYNITVVVKREDCVRALRAAHSRFYLSETTISVGIVGPGLIGATLLDQLRDQAAVLKEDFNIELRVM GITGSRTMLLSNSGIDLSRWRELMKSKGEVTDLEKFTYHVQGNHFIPNTVLVDCTADAAIASHYYDWLRKGIHVVTPNKKANSGPLDQLRALQRQSYTHY FYEATVGAGLPIISTLRGLLETGDKILEIEGIFSGTLSYIFNNFVGDRAFSDVVSEAKKKGYTEPDPRDDLSGTDVARKVIILARESGLKLELADIPVQS LVPEPLRASASADEFMKQLPEFDQDIANERRAAEADGDVLRYVGVVDVIRAEGRVELRRYKKDHAFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAQVT AAGVFSDILRLASYLGAPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10041071 [exp]	0	1
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	1.0	0.9617
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	2.0	0.9611
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10030339 [exp]	2.8	0.9555
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10015451 [exp]	4.2	0.9574
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10012568 [exp]	4.5	0.9551
AT3G52990			Pyruvate kinase family protein...		Lus10035581 [exp]	7.9	0.9450
AT5G10240		ASN3	asparagine synthetase 3 (.1.2)		Lus10041698 [exp]	8.1	0.9230
AT5G60700			glycosyltransferase family pro...		Lus10037396 [exp]	8.5	0.9397
AT3G52990			Pyruvate kinase family protein...		Lus10008644 [exp]	9.2	0.9283
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	9.2	0.9239

Compare expression of checked genes

Lus10041071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.