Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07160 238 / 4e-76 Protein phosphatase 2C family protein (.1) AT2G40180 224 / 1e-70 ATHPP2C5 phosphatase 2C5 (.1) AT2G30020 218 / 5e-68 Protein phosphatase 2C family protein (.1) AT1G67820 200 / 1e-60 Protein phosphatase 2C family protein (.1) AT1G43900 151 / 8e-43 Protein phosphatase 2C family protein (.1) AT4G31750 144 / 2e-40 WIN2 HOPW1-1-interacting 2 (.1) AT4G08260 139 / 9e-40 Protein phosphatase 2C family protein (.1) AT5G24940 139 / 1e-37 Protein phosphatase 2C family protein (.1) AT5G10740 137 / 2e-37 Protein phosphatase 2C family protein (.1) AT1G48040 135 / 9e-37 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030340 [exp] 348 / 5e-122 AT2G40180 160 / 7e-48 phosphatase 2C5 (.1) Lus10042275 [exp] 226 / 3e-71 AT1G07160 392 / 1e-135 Protein phosphatase 2C family protein (.1) Lus10026381 [exp] 223 / 4e-70 AT1G07160 390 / 4e-135 Protein phosphatase 2C family protein (.1) Lus10036871 [exp] 190 / 5e-57 AT1G67820 380 / 1e-129 Protein phosphatase 2C family protein (.1) Lus10006222 [exp] 178 / 4e-52 AT1G67820 382 / 6e-130 Protein phosphatase 2C family protein (.1) Lus10019012 [exp] 147 / 4e-41 AT5G53140 474 / 2e-167 Protein phosphatase 2C family protein (.1) Lus10014926 [exp] 144 / 2e-40 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1) Lus10026239 [exp] 141 / 5e-40 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 141 / 7e-40 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G099400 [exp] 357 / 5e-122 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 348 / 3e-118 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.009G073000 [exp] 245 / 3e-78 AT2G30020 466 / 9e-164 Protein phosphatase 2C family protein (.1) Potri.001G278500 [exp] 235 / 8e-75 AT2G30020 451 / 2e-158 Protein phosphatase 2C family protein (.1) Potri.008G070400 [exp] 232 / 8e-74 AT2G40180 365 / 1e-124 phosphatase 2C5 (.1) Potri.010G187000 [exp] 226 / 3e-71 AT2G30020 381 / 6e-131 Protein phosphatase 2C family protein (.1) Potri.010G047600 [exp] 204 / 3e-62 AT1G67820 399 / 2e-136 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 149 / 1e-42 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 148 / 3e-42 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 142 / 5e-40 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10041072 pacid=23179949 polypeptide=Lus10041072 locus=Lus10041072.g ID=Lus10041072.BGIv1.0 annot-version=v1.0 ATGAAGAAGAACAGGCCAGAGAAACTGATCATGCCCATGAAAACCTACGACCCCGAACTGGATCAGTTTGAAGAAGCCCACAAGAGAATGATGGAGAGCA AAGAAGTTGAGGTTCAGGGTCAACAATTTTGCTTGGCTAGCAAGAAAGGGAGGAGGCAATTCATGGAGGATGGTTATGGAGTTCTCACCGACATCCTGGG CCATTCCAACCATGCTTTTTTCGCGGTGATCGATGGACATGGTGGTCCGGAGGCGATGGAGTACGTGGCGGAGAACTTGGGGAAGAACATAGTGAAAGCC ATGGAAGGCGATGACGATGATGATGTAGAAGAAGCGATTCGAAAAGGATACTTGGTAACAGACAAGGAGTTTCTTAGCCAGCTTCGGACGAGGGTTTTGC TAATAGTTGTTTTGGCTATGAGTGAGCAGGGTGTTAGAAGTGGAGCTTGTGCGGCAAGCGTAGTGTTAAAGAATGGTGAATTGCACGTCGCAAATGTAGG AGATTGCAGGGTAGTCTTAAGCAGGAATGGCATAGCAACTCCATTAACACTCGATCATCGTGTGAGCTCCAGAGAAGATGAGTGTTTGCGCATTCAGAAC TCGGGCGGCTACGTGCTTGGCGGAAGGGTGCAAGCGACACTAGCCGTTTCGAGGGCCATCGGGGACCTACATCTGAAGGAATGGGTGATATCGGAGCCCG AAATTGCTAAAGTTGAACTGAGCCCTGATTGCCAGTTCTTGGTCATGGCTTCTGATGGGCTGTGGGATAAGGTTGGCGAGCAAGAGGCAGTTGATGAAGT TTCGAGACATATAACTAGTAACAGTAATATTCTTGATATTATTAATGGTGGTGTGATGGAATCATGCAAGAAGCTGGTGAAACTGGCTTTCAATAGAGGC AACTTGGACGATGCTACTGTTATGGTTGTAAGCCTTGCCAATTTTGTGCAACCACCACTCTTCAACGGCTCATGA
AA sequence Show only first row Show all	>Lus10041072 pacid=23179949 polypeptide=Lus10041072 locus=Lus10041072.g ID=Lus10041072.BGIv1.0 annot-version=v1.0 MKKNRPEKLIMPMKTYDPELDQFEEAHKRMMESKEVEVQGQQFCLASKKGRRQFMEDGYGVLTDILGHSNHAFFAVIDGHGGPEAMEYVAENLGKNIVKA MEGDDDDDVEEAIRKGYLVTDKEFLSQLRTRVLLIVVLAMSEQGVRSGACAASVVLKNGELHVANVGDCRVVLSRNGIATPLTLDHRVSSREDECLRIQN SGGYVLGGRVQATLAVSRAIGDLHLKEWVISEPEIAKVELSPDCQFLVMASDGLWDKVGEQEAVDEVSRHITSNSNILDIINGGVMESCKKLVKLAFNRG NLDDATVMVVSLANFVQPPLFNGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10038983 [exp]	1.4	0.9753
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10025493 [exp]	1.7	0.9774
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	3.5	0.9698
AT4G25030			unknown protein		Lus10036514 [exp]	4.2	0.9578
AT3G26310		CYP71B35	"cytochrome P450, family 71, s...		Lus10024518 [exp]	4.9	0.9637
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10020616 [exp]	5.7	0.9662
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	6.5	0.9667
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	6.5	0.9668
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	7.4	0.9678
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	7.4	0.9650

Compare expression of checked genes

Lus10041072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.