Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02760 965 / 0 Class II aaRS and biotin synthetases superfamily protein (.1) AT3G46100 153 / 2e-39 ATHRS1 Histidyl-tRNA synthetase 1 (.1) AT3G59410 127 / 8e-30 ATGCN2, GCN2 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) AT5G03406 89 / 2e-19 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030341 [exp] 1676 / 0 AT3G02760 972 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1) Lus10014422 [exp] 150 / 2e-38 AT3G46100 758 / 0.0 Histidyl-tRNA synthetase 1 (.1) Lus10023925 [exp] 149 / 5e-38 AT3G46100 760 / 0.0 Histidyl-tRNA synthetase 1 (.1) Lus10014895 [exp] 94 / 2e-20 AT3G59410 515 / 1e-173 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G071400 [exp] 1143 / 0 AT3G02760 879 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1) Potri.006G124400 [exp] 149 / 5e-38 AT3G46100 636 / 0.0 Histidyl-tRNA synthetase 1 (.1) Potri.007G128300 [exp] 124 / 8e-29 AT3G59410 1610 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain CL0458 [flax] [poplar] PF00221 [flax] [poplar] Lyase_aromatic Aromatic amino acid lyase CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
Representative CDS sequence Show only first row Show all	>Lus10041073 pacid=23179604 polypeptide=Lus10041073 locus=Lus10041073.g ID=Lus10041073.BGIv1.0 annot-version=v1.0 ATGGCGGACGTCGGCGAATTGCAGATTATAACCCTGGGAGGTAAGGGCTCTGCTCTTTCCTCATCCTCCGTCTACGCCATTGCCGCAGGCCAAGCTCGCA TTCGCATCGACTCTTCAGCGCTGGACAGACTCAGCACTCAGCCGCCGCAGCCGTCATCTTTGAAGAAATCTGAAATTCGATTCTCTGACGCCTCCAACTC GGTTGAATCCCGCTCAGCTCTCGTCGTGCTGCTCAACAAGCTCCTTCGCCACCCCAATCCCTCAAAGATCCGCACTGCTCTCCCAACTCTAATCGCCGAT ACGCTGAATTCTGAAACCGGATCGTCAAGTCTCGAGTCGGTTGAACTGAACCAAGAGGAAGACTTGGTAGTTGCGAAATCATGCGCCGAGCTGTACGGCA TTTCTGCCATTCTTGATCATGAATCAGCTTCCCTGGCGACGATCGTGGACGCTGTGGCCGCATTATCGTGCGAGGCGTTGAAAGGTAACGATGTGGCGTT TAATGCCACGGATTCTGGAGACGGCCAAGTCGACAAGGATGAGGTTGGGGTTGCCAGTGATATAAAGGTGTTGCTTGGAGGATCCAAGATGGTAGGCAAG ACGCAGATTGAAGCAATTTCCGGGGTTCCTCAAATTCATGGTGGGCTAAGGCAGTTTGTGAAGTCGGTGCATTCCATGACGAGAGTGAAGCTGAATTCCA GTGTGAACGCGGTGAATTGCGGGGAGAGGGAGGCAGTAGCTGGTAAGCTGCAACCATTTACTGCCCTCCGGAATGTTGGAGAAAGTAGTTTATGCAGGGC AAAGCTTAACATCGCTGCTGTAGGAAATGAAAGTTCCAGAAATGGGCTGCTCAGTCTGTTTGAGAGGAAATGCCCTACGGAGAGTGATTTGAAAACTGCG ACTAAGTTGGTTTCAGATCTTCTTTTTGATAGGGATTACAGTGCCTTTGCTCATGCTCTGAATGCCTTGTTAGGAATTCTGTGGAATATTGTGTCATGGG AAGCTGCGACAGCTTTTCTCGCCCTAGAGGGTGGTGAGTTGGAGGGTGCTAAAATTTCCGAAGTCATTGGTGATGATGCACCGGTGAACAAAAAAAGTGA GAAGAAGAAAAAGAAGGCGGTTTTAGGGAAAGGTACTGCTGTGATTGTGCAGTTGATTAAGGATATGCTACAGAAGCCTGAAGATGGTCAAAATGTGTTA GAGAAGTGGGTTGGGGATCTGTTACTGTTTTTCGACCACAAGCGCCCTCAATTTGATGGTTTAGTCAGCAAAGTGAAGGAAATAGTAGAAAGCAATGAAA GTAGAAGGCTTCCCAAGCTTCCTAAGGGTACCCGTGATTTTTCGAAGGAGCAAATGGCAATAAGAGAGAAAGCATTCTCTATCATCGCTGATGTTTTCAA AAGACATGGTGCCACTTCTCTAGACACTCCAGTTTTTGAGTTGAGAGAGACGTTGATGGGGAAATATGGGGAGGATTCCAAGTTGGTCTATGATCTTGCT GATCAGGGTGGAGAGCTTTGTTCTTTGCGCTATGACTTAACCGTTCCATTTGCTAGGTATGTGGCTATGAACGGTATCACATCATTTAAAAGATACCAAA TAGCTAAAGTGTACCGAAGAGATAACCCGGCCAAGGGAAGATACCGGGAATTTTATCAGTGTGATTTTGATATTGCCGGACAGTATGAGGAAATGGGACC TGATTTTGAGATCATTAAAATTCTGACGGAGTTGCTTGATGAGCTAGATATTGGTGATTATGAGGTCAAATTGAATCACCGGAAGTTGCTTGATGGCATG TTAGAAATATGTGGAGTGCCTCCTGAAAAGTTCAGGACAATTTGTTCAAGTATTGATAAATTAGACAAACAGTCGTTTGACCAGGTTAAAAAAGAAATGG TGGATGAGAAAGGCCTAAGTGTAGCCACTGCAGATAAAATTGGTACTTTCGTGAAGGAAAGAGGGTCACCTAAGGAATTACTATTGAAGCTTAAACAAGA GGGCAGTGAATTTTTGCTGAATTCGTCTTCCAAACGTGCATTGGATGAACTGGATATTCTTTTTGAAGCTCTGGAGAAATCAAAGTGCATTGGCAAAGTA ACCTTCGACTTGAGTCTTGCCAGAGGGCTTGATTACTACACTGGAGTTATATATGAAGCTGTCTTCAAAGGAACTACACAAGTTGGTTCAATTGCTGCTG GTGGGCGTTACGACAACCTTATAGGCATGTTCGGGACAAAGCAAGTCCCTGCTGTTGGAGTTAGCCTAGGGATTGAACGTGTATTCGCCATAATGGAGCA GCTTCAGAAGGATCGGAACCAGGTAGTCCGGCCAACCGAAACCCAAGTTCTGCTGAGCATCCTAGGGGATAAAAGCAAACTGCCGATAGCTGCAGAACTT GCTGGTGAGCTGTGGGATAACAAAGTGAAAGCGGAGTATGTTGTGAGCACGAGATTCAGTAAGCACATAGACCGTGCTAGGGAATCGAGGGTACCGTGGA TGGTTCTTGTAGGTGACAAGGAGCTGGAAAGGGGTATTGTGAAGCTGAAGAACATTGAGACCACCGCAGAAGAGGAGGTTCCGAGAAGTACCTTTGTCCA GGAATTGAAGAGACGGTTGCAGGAATGA
AA sequence Show only first row Show all	>Lus10041073 pacid=23179604 polypeptide=Lus10041073 locus=Lus10041073.g ID=Lus10041073.BGIv1.0 annot-version=v1.0 MADVGELQIITLGGKGSALSSSSVYAIAAGQARIRIDSSALDRLSTQPPQPSSLKKSEIRFSDASNSVESRSALVVLLNKLLRHPNPSKIRTALPTLIAD TLNSETGSSSLESVELNQEEDLVVAKSCAELYGISAILDHESASLATIVDAVAALSCEALKGNDVAFNATDSGDGQVDKDEVGVASDIKVLLGGSKMVGK TQIEAISGVPQIHGGLRQFVKSVHSMTRVKLNSSVNAVNCGEREAVAGKLQPFTALRNVGESSLCRAKLNIAAVGNESSRNGLLSLFERKCPTESDLKTA TKLVSDLLFDRDYSAFAHALNALLGILWNIVSWEAATAFLALEGGELEGAKISEVIGDDAPVNKKSEKKKKKAVLGKGTAVIVQLIKDMLQKPEDGQNVL EKWVGDLLLFFDHKRPQFDGLVSKVKEIVESNESRRLPKLPKGTRDFSKEQMAIREKAFSIIADVFKRHGATSLDTPVFELRETLMGKYGEDSKLVYDLA DQGGELCSLRYDLTVPFARYVAMNGITSFKRYQIAKVYRRDNPAKGRYREFYQCDFDIAGQYEEMGPDFEIIKILTELLDELDIGDYEVKLNHRKLLDGM LEICGVPPEKFRTICSSIDKLDKQSFDQVKKEMVDEKGLSVATADKIGTFVKERGSPKELLLKLKQEGSEFLLNSSSKRALDELDILFEALEKSKCIGKV TFDLSLARGLDYYTGVIYEAVFKGTTQVGSIAAGGRYDNLIGMFGTKQVPAVGVSLGIERVFAIMEQLQKDRNQVVRPTETQVLLSILGDKSKLPIAAEL AGELWDNKVKAEYVVSTRFSKHIDRARESRVPWMVLVGDKELERGIVKLKNIETTAEEEVPRSTFVQELKRRLQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02760			Class II aaRS and biotin synth...		Lus10041073 [exp]	0	1
AT3G02760			Class II aaRS and biotin synth...		Lus10030341 [exp]	1.0	0.9679
AT3G03060			P-loop containing nucleoside t...		Lus10031787 [exp]	1.4	0.9649
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	2.8	0.9565
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10027702 [exp]	3.5	0.9573
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10042058 [exp]	4.0	0.9403
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10000982 [exp]	4.5	0.9548
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	4.6	0.9485
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	5.1	0.9426
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031481 [exp]	6.9	0.9484
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10027886 [exp]	7.7	0.9448

Compare expression of checked genes

Lus10041073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.