Plant FIBer expression Database

Lus10041075 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G10100 110 / 7e-33 CNX7, SIR5 "co-factor for nitrate, reductase and xanthine dehydrogenase 7", co-factor for nitrate, reductase and xanthine dehydrogenase 7 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030343
[exp]
156 / 6e-51 AT4G10100 119 / 3e-36 "co-factor for nitrate, reductase and xanthine dehydrogenase 7", co-factor for nitrate, reductase and xanthine dehydrogenase 7 (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G070801
[exp]
121 / 3e-37 AT4G10100 122 / 1e-37 "co-factor for nitrate, reductase and xanthine dehydrogenase 7", co-factor for nitrate, reductase and xanthine dehydrogenase 7 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0072 Ubiquitin PF02597 ThiS ThiS family
Representative CDS sequence
>Lus10041075 pacid=23180035 polypeptide=Lus10041075 locus=Lus10041075.g ID=Lus10041075.BGIv1.0 annot-version=v1.0
ATGGCTGCTGTGGACAAGAAGATGGAGAATGTTGGTGTTAAACCAGTTGTTGGCAAGGCATCGGCATCCGCCTCGTCCCTTAAGATAAAGGTGTTGTTCT
TTGCTAGAGCTCGAGATCTAACCGGCGCAAATGAAACACTGCTAGAGGTTTCAGCCGGCAGTACAGCAGGTGAGTGCTTGAATGAGCTCATTGTTCGGTT
TCCAGGGTTGGAGGAGATCCGTAGATGTATGGTACTAGCACTGAACGAGGAATACACATCGGAGTCTGCAATTGTCAAGGAGAATGACGAGCTAGCAATC
ATTCCCCCCATCAGTGGTGGCTAG
AA sequence
>Lus10041075 pacid=23180035 polypeptide=Lus10041075 locus=Lus10041075.g ID=Lus10041075.BGIv1.0 annot-version=v1.0
MAAVDKKMENVGVKPVVGKASASASSLKIKVLFFARARDLTGANETLLEVSAGSTAGECLNELIVRFPGLEEIRRCMVLALNEEYTSESAIVKENDELAI
IPPISGG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G10100 CNX7, SIR5 "co-factor for nitrate, reduct... Lus10041075
[exp]
0 1
AT2G37480 unknown protein Lus10023755
[exp]
1.7 0.9307
AT3G18620 DHHC-type zinc finger family p... Lus10040971
[exp]
4.0 0.9151
AT2G04900 unknown protein Lus10001166
[exp]
6.8 0.8786
AT3G22560 Acyl-CoA N-acyltransferases (N... Lus10021914
[exp]
8.0 0.9048
AT1G21770 Acyl-CoA N-acyltransferases (N... Lus10025670
[exp]
8.8 0.9035
AT4G05440 EDA35 embryo sac development arrest ... Lus10027955
[exp]
9.7 0.9037
AT1G27450 APRT, ATAPT1, A... ARABIDOPSIS THALIANA ADENINE P... Lus10007757
[exp]
10.8 0.9089
AT3G15352 ATCOX17 ARABIDOPSIS THALIANA CYTOCHROM... Lus10037356
[exp]
13.0 0.8950
AT4G27880 Protein with RING/U-box and TR... Lus10022405
[exp]
13.4 0.8958
AT1G64385 unknown protein Lus10032376
[exp]
14.4 0.9017

Lus10041075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.