Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04800 227 / 7e-78 Ribosomal S17 family protein (.1.2.3.4) AT2G05220 225 / 2e-77 Ribosomal S17 family protein (.1.2) AT2G04390 224 / 8e-77 Ribosomal S17 family protein (.1) AT3G10610 219 / 5e-75 Ribosomal S17 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030344 [exp] 274 / 8e-91 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10021307 [exp] 223 / 3e-76 AT5G04800 231 / 9e-80 Ribosomal S17 family protein (.1.2.3.4) Lus10004208 [exp] 219 / 1e-74 AT2G04390 233 / 4e-80 Ribosomal S17 family protein (.1) Lus10029412 [exp] 219 / 1e-74 AT2G04390 233 / 4e-80 Ribosomal S17 family protein (.1) Lus10016985 [exp] 142 / 4e-45 AT3G10610 143 / 1e-45 Ribosomal S17 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G241200 [exp] 223 / 3e-76 AT5G04800 228 / 2e-78 Ribosomal S17 family protein (.1.2.3.4) Potri.008G017300 [exp] 222 / 4e-76 AT5G04800 229 / 1e-78 Ribosomal S17 family protein (.1.2.3.4) Potri.016G073750 [exp] 169 / 2e-55 AT5G04800 171 / 5e-56 Ribosomal S17 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00833 [flax] [poplar] Ribosomal_S17e Ribosomal S17
Representative CDS sequence Show only first row Show all	>Lus10041076 pacid=23179913 polypeptide=Lus10041076 locus=Lus10041076.g ID=Lus10041076.BGIv1.0 annot-version=v1.0 ATGGGACGTGTTCGTACCAAGACCGTGAAGAAATCCTCGCGCCAGGTGATCGAGCGCTACTACTCGAAGATGACACTCGACTTCCACACCAACAAGAAGA TCCTGGAAGAGGTGGCCATCATCCCCTCGAAGCGCCTCCGCAACAAGATCGCCGGGTTCTCCACCCACCTGATGAAGCGGATCCAGAAGGGCCCCGTTCG CGGCATCTCCCTCAAGCTTCAGGAGGAGGAGCGCGAACGCCGCATGGACTTCGTCCCGGAACAATCCGCCATCAACATCGACAGGATTGAGGTCGACAAG GAAACCCTTGAGATGCTCGGCGCACTCGGCATGAGCGGCGTTGAAGGCATCGTCGTAGTGGAACCCGGCACCGTCGCTCCGGTTTACGGGTTTGGCAGAG GCAGGAGGTTTTGA
AA sequence Show only first row Show all	>Lus10041076 pacid=23179913 polypeptide=Lus10041076 locus=Lus10041076.g ID=Lus10041076.BGIv1.0 annot-version=v1.0 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEQSAINIDRIEVDK ETLEMLGALGMSGVEGIVVVEPGTVAPVYGFGRGRRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04800			Ribosomal S17 family protein (...		Lus10041076 [exp]	0	1
AT1G07940			GTP binding Elongation factor ...		Lus10023174 [exp]	2.0	0.9405
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	3.2	0.9499
AT1G74050			Ribosomal protein L6 family pr...		Lus10038776 [exp]	4.6	0.9259
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Lus10004272 [exp]	5.5	0.9397
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	6.6	0.9315
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10017569 [exp]	7.3	0.9231
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	7.4	0.9306
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	8.1	0.9299
AT5G09500			Ribosomal protein S19 family p...		Lus10024865 [exp]	10.5	0.9210
AT1G33140		PGY2	PIGGYBACK2, Ribosomal protein ...		Lus10032918 [exp]	10.6	0.9258

Compare expression of checked genes

Lus10041076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.