Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80560 600 / 0 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT1G31180 573 / 0 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1) AT5G14200 572 / 0 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3) AT1G80555 119 / 2e-32 Isocitrate/isopropylmalate dehydrogenase family protein (.1) AT5G03290 118 / 9e-30 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 112 / 2e-27 IDH-VI isocitrate dehydrogenase VI (.1) AT4G35650 102 / 5e-24 IDH-III isocitrate dehydrogenase III (.1) AT4G35260 93 / 1e-20 IDH-I, IDH1 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) AT2G17130 92 / 1e-20 IDH-II, IDH2 isocitrate dehydrogenase II, isocitrate dehydrogenase subunit 2 (.1.2) AT1G32480 50 / 9e-07 IDH-IV isocitrate dehydrogenase IV (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030344 [exp] 741 / 0 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10002221 [exp] 120 / 1e-30 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 120 / 1e-30 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10013806 [exp] 119 / 8e-30 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10026519 [exp] 114 / 2e-28 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10041824 [exp] 94 / 7e-21 AT4G35260 656 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10028374 [exp] 94 / 9e-21 AT4G35260 659 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10014436 [exp] 89 / 2e-19 AT4G35260 620 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10023937 [exp] 84 / 1e-17 AT4G35260 549 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185600 [exp] 615 / 0 AT1G80560 639 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Potri.016G091200 [exp] 119 / 3e-30 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.006G126700 [exp] 117 / 3e-29 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.005G099600 [exp] 94 / 5e-21 AT4G35260 613 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 92 / 2e-20 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.004G204300 [exp] 92 / 3e-20 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.007G064000 [exp] 89 / 2e-19 AT4G35260 595 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10041077 pacid=23179816 polypeptide=Lus10041077 locus=Lus10041077.g ID=Lus10041077.BGIv1.0 annot-version=v1.0 ATGGCGACTTCTGTGCAAATAAGGTTTAATCCGGTGGGCGCAGCTTCACGATGTAAGCCCGCGTCCAAATTTTCCCGGCGACTGGTTAGAGTCAGTTGCG CGGCCAATGCGTCGCCGAAACAGTACTCCATCACTCTTCTCCCCGGAGATGGCATTGGCCCTGAAGTTATCTCCGTTGCCAAGAACGTCCTCAACCTTAC TGCTTCTTTGGAAGGCATTGAGTTTAAATATCAAGAGATGCCAATGGGTGGATCAGCCTTGGATTTGGTTGGTGTTCCATTGCCAGAAGAAACTCTTGCT GCGGCTAAAGAATCCGATGCAGTTCTTCTTGGAGCAATTGGGGGGTACAAATGGGATAATAATGCAAAACATTTGAAGCCAGAGACTGGATTGCTCCAGA TAAGAGAAGGCCTGAAAGTGTTTGCGAATTTGAGGCCAGCAGCTGTTTTCCCTCAGTTGGTGGAGGCTTCAACGTTGAAGAAAGAAGTTGTTGAAGGTGT TGATGTTATGGTTGTGAGGGAGCTTACAGGAGGAATTTATTTTGGCAAGCCAAGAGGCTTTAAAACAGATGAAAATGGTGAGGAGGTTGGCTTCAATACT GAGGTGTATGCTGCATATGAGATTGATCGCATTGCTCGTGTTGCATTTGAGACTGCTAGGAAGCGGCAAGGGAGGCTTTGTTCTGTGGATAAAGCTAATG TCTTGGAGGCATCAATGTTGTGGAGAAGGCGCGTAACTGCCATTGCTGAAGAGTATCCAGACGTTGCAGTCTCACACATGTATGTTGACAATGCTGCTAT GCAGCTTATAAGGAACCCAAAACAGTTTGATACGATAGTGACAAACAACATATTTGGTGATATACTATCGGATGAGGCATCTATGATCACGGGAAGCATA GGGATGCTTCCATCGGCCAGTCTTGGATCATCAGGTCCTGGACTTTTTGAGCCAATTCATGGTTCTGCTCCTGACATTGCTGGACAGGATAAAGCAAATC CACTGGCGACCATTCTTAGCGCAGCAATGCTTTTGAAATATGGCTTAGGGCAGGAAAGTGCAGCAAAGCGAATTGAGAAGGCAGTACTGGATATCCTAGA CAAGGGATTCCGTACGGGTGACATATATTCACCTGGCACAAAATTGGTGGGATGCAAGGAAATGGGGGAGGCAGTGTTGAGATCAGTCGAGTCCCAGGTT TCTGCTGCTGTGTGA
AA sequence Show only first row Show all	>Lus10041077 pacid=23179816 polypeptide=Lus10041077 locus=Lus10041077.g ID=Lus10041077.BGIv1.0 annot-version=v1.0 MATSVQIRFNPVGAASRCKPASKFSRRLVRVSCAANASPKQYSITLLPGDGIGPEVISVAKNVLNLTASLEGIEFKYQEMPMGGSALDLVGVPLPEETLA AAKESDAVLLGAIGGYKWDNNAKHLKPETGLLQIREGLKVFANLRPAAVFPQLVEASTLKKEVVEGVDVMVVRELTGGIYFGKPRGFKTDENGEEVGFNT EVYAAYEIDRIARVAFETARKRQGRLCSVDKANVLEASMLWRRRVTAIAEEYPDVAVSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSI GMLPSASLGSSGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLKYGLGQESAAKRIEKAVLDILDKGFRTGDIYSPGTKLVGCKEMGEAVLRSVESQV SAAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80560		ATIMD2	ARABIDOPSIS ISOPROPYLMALATE DE...		Lus10041077 [exp]	0	1
AT3G45030			Ribosomal protein S10p/S20e fa...		Lus10031706 [exp]	4.9	0.8398
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10019910 [exp]	6.9	0.8293
AT1G26880			Ribosomal protein L34e superfa...		Lus10008617 [exp]	7.3	0.8317
AT3G11510			Ribosomal protein S11 family p...		Lus10014220 [exp]	10.8	0.8081
AT1G20770			unknown protein		Lus10030736 [exp]	10.9	0.7822
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10027194 [exp]	17.5	0.7772
AT4G25050		ACP4	acyl carrier protein 4 (.1.2)		Lus10038636 [exp]	24.0	0.7385
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10020398 [exp]	24.8	0.7759
AT2G18110			Translation elongation factor...		Lus10013555 [exp]	27.3	0.7372
AT3G54200			Late embryogenesis abundant (L...		Lus10040941 [exp]	29.9	0.7519

Compare expression of checked genes

Lus10041077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.