Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61550 174 / 9e-55 RING/U-box superfamily protein (.1) AT2G46160 162 / 5e-50 RING/U-box superfamily protein (.1) AT5G07040 93 / 6e-24 RING/U-box superfamily protein (.1) AT5G06490 89 / 5e-22 RING/U-box superfamily protein (.1) AT2G35910 81 / 8e-19 RING/U-box superfamily protein (.1) AT2G25409 76 / 3e-17 unknown protein AT5G53110 77 / 3e-16 RING/U-box superfamily protein (.1) AT2G20030 75 / 9e-16 RING/U-box superfamily protein (.1) AT2G25410 74 / 2e-15 RING/U-box superfamily protein (.1) AT2G34990 73 / 3e-15 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036404 [exp] 145 / 1e-44 AT3G61550 149 / 2e-46 RING/U-box superfamily protein (.1) Lus10024124 [exp] 94 / 9e-24 AT5G07040 190 / 2e-62 RING/U-box superfamily protein (.1) Lus10023086 [exp] 78 / 1e-16 AT5G53110 161 / 1e-59 RING/U-box superfamily protein (.1) Lus10032382 [exp] 76 / 8e-16 AT5G53110 237 / 1e-74 RING/U-box superfamily protein (.1) Lus10003400 [exp] 70 / 5e-15 AT5G53110 152 / 3e-45 RING/U-box superfamily protein (.1) Lus10030972 [exp] 72 / 7e-15 AT4G17920 191 / 6e-59 RING/U-box superfamily protein (.1) Lus10035368 [exp] 72 / 8e-15 AT4G17920 194 / 2e-60 RING/U-box superfamily protein (.1) Lus10012628 [exp] 72 / 1e-14 AT5G53110 284 / 5e-93 RING/U-box superfamily protein (.1) Lus10034953 [exp] 71 / 2e-14 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165200 [exp] 202 / 6e-66 AT3G61550 204 / 5e-67 RING/U-box superfamily protein (.1) Potri.014G091000 [exp] 200 / 4e-65 AT3G61550 176 / 1e-55 RING/U-box superfamily protein (.1) Potri.010G243400 [exp] 96 / 1e-24 AT2G35910 152 / 4e-47 RING/U-box superfamily protein (.1) Potri.016G067900 [exp] 90 / 1e-22 AT2G35910 129 / 7e-38 RING/U-box superfamily protein (.1) Potri.001G032300 [exp] 88 / 1e-21 AT5G07040 143 / 5e-44 RING/U-box superfamily protein (.1) Potri.003G192700 [exp] 87 / 3e-21 AT5G07040 194 / 3e-64 RING/U-box superfamily protein (.1) Potri.010G243200 [exp] 87 / 3e-21 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1) Potri.006G201500 [exp] 87 / 3e-21 AT2G35910 122 / 4e-35 RING/U-box superfamily protein (.1) Potri.010G243300 [exp] 85 / 1e-20 AT2G35910 115 / 2e-32 RING/U-box superfamily protein (.1) Potri.008G019000 [exp] 84 / 3e-20 AT5G06490 131 / 8e-39 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10041079 pacid=23179691 polypeptide=Lus10041079 locus=Lus10041079.g ID=Lus10041079.BGIv1.0 annot-version=v1.0 ATGTCCTCCCCCGCCGCCGCCGCAACCGCCGTTCCTTTCACACTCTCCCCACCTACTCCCCTCCCACCAACCACCACGCCTTCCAATTACCTCACCAATC TCGGCCTCGGCTACTCAATCGCCATCGCTTTCGGCTTCCTAGTCCTCCTCTCCAGCATCCTCCTCGCCTCCTACATCTGCTGCCGCCACCGCCGCTCTCA CCCCCGCACCGCTCATCCTCCTCCTTCCTCCTCCTCCGATGGAATCATCCTCCCGAGAGTCATCTTCGTCGCTGAAGACGACGATGACGAAGGACGCAAC GGGGAGAATTCCGTCTCCGCCGTCGGCCTCGATCCCGCGGTGATCAACTCCTACCCTAGATTCCAATTCTCCAAGGAGGCCGCTGCTGCGGCCTCCGGTG TTGGTAATAGTAACGGCGTGGAAACGATGTGTTCGATCTGTCTGTGCGAGTACAAGGATCTGGAGATGATGAGGATGATGCCGGAGTGCCGCCATTACTT CCACCTGTGGTGTCTCGACGCTTGGCTGAAGCTCAACGGATCTTGCCCCGTCTGCCGGAATTCGCCGCTGCCGACTCCACTGTCCACGCCGCTCTCGGAG GTCGTGCCGCTGTCCCAGCATGCCGCTGATCGTAGAAGGAGGTAG
AA sequence Show only first row Show all	>Lus10041079 pacid=23179691 polypeptide=Lus10041079 locus=Lus10041079.g ID=Lus10041079.BGIv1.0 annot-version=v1.0 MSSPAAAATAVPFTLSPPTPLPPTTTPSNYLTNLGLGYSIAIAFGFLVLLSSILLASYICCRHRRSHPRTAHPPPSSSSDGIILPRVIFVAEDDDDEGRN GENSVSAVGLDPAVINSYPRFQFSKEAAAAASGVGNSNGVETMCSICLCEYKDLEMMRMMPECRHYFHLWCLDAWLKLNGSCPVCRNSPLPTPLSTPLSE VVPLSQHAADRRRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61550			RING/U-box superfamily protein...		Lus10041079 [exp]	0	1
AT3G61550			RING/U-box superfamily protein...		Lus10036404 [exp]	2.0	0.8690
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10007533 [exp]	4.7	0.8964
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10009842 [exp]	9.4	0.8859
AT2G37110			PLAC8 family protein (.1)		Lus10019922 [exp]	11.1	0.8728
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10030547 [exp]	11.5	0.8632
AT5G64090			unknown protein		Lus10020420 [exp]	15.2	0.8658
AT3G44610			Protein kinase superfamily pro...		Lus10006272 [exp]	17.9	0.8513
AT3G12650			unknown protein		Lus10037700 [exp]	20.3	0.8494
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	21.0	0.8629
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10016554 [exp]	21.7	0.8467

Compare expression of checked genes

Lus10041079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.