Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23630 286 / 3e-97 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT2G46170 279 / 7e-95 Reticulon family protein (.1.2) AT4G11220 274 / 2e-92 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT5G41600 273 / 2e-92 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT3G61560 261 / 8e-88 Reticulon family protein (.1.2) AT1G64090 259 / 5e-87 RTNLB3 Reticulan like protein B3 (.1.2) AT4G01230 211 / 2e-68 Reticulon family protein (.1) AT3G10260 201 / 4e-64 Reticulon family protein (.1.2.3) AT3G18260 165 / 2e-50 Reticulon family protein (.1) AT2G15280 129 / 1e-36 Reticulon family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036405 [exp] 408 / 1e-145 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2) Lus10027548 [exp] 288 / 2e-98 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10027546 [exp] 283 / 2e-96 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10014948 [exp] 281 / 1e-95 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10038833 [exp] 279 / 9e-95 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10039307 [exp] 271 / 1e-91 AT1G64090 307 / 4e-106 Reticulan like protein B3 (.1.2) Lus10032313 [exp] 271 / 2e-91 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10028753 [exp] 285 / 8e-90 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10017533 [exp] 255 / 3e-85 AT1G64090 303 / 9e-104 Reticulan like protein B3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G091200 [exp] 308 / 3e-106 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 303 / 2e-104 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.001G097700 [exp] 298 / 2e-102 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 293 / 2e-100 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.015G027300 [exp] 271 / 1e-91 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 261 / 1e-87 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.002G055600 [exp] 208 / 4e-67 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.005G206800 [exp] 202 / 7e-65 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.013G160900 [exp] 196 / 3e-62 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.012G054100 [exp] 164 / 5e-50 AT3G18260 238 / 6e-80 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10041080 pacid=23179914 polypeptide=Lus10041080 locus=Lus10041080.g ID=Lus10041080.BGIv1.0 annot-version=v1.0 ATGGCTGAGGAGCATTCCGAGAGTCCGATGGAGTCCGTGATTGACAAGATCAGTGAGAAGATCCACTCTCATGATTCGTCGTCTTCCTCTTCCTCCGACT CGGATTCCGATTCGGAGAAGAAGGCGGCATCTGACTCATCGGCTTCGGTGAAGGATAAGATCTTCAGGTTGTTTGGTAGGGAGAGGCCTGTTCACCATGT TCTCGGCGGAGGCAAAGCTGCTGATGTGCTGCTGTGGAGGAACAAGAAGGCTACTGGGGTAATCCTTGGTGCAGCTACGCTAATCTGGGTTCTCTTTGAG CTGGTTGAGTATCACTTGCTGACACTAGTTTGCCACACTTTGATACTCTCCCTTGCCCTGTTGTTCTTGTGGTCTAATGCCCATACCTTGATTAACAAGA CTCCACCCCGCATTCCTGAGGTCCATCTTCCAGAAGAGCCAGTTCTTCAGGCTGCTGCAGGACTGAGAATTGAGATCAACCAAGCTCTTTCCGTGTTGAG GAATATTGCAGCTGGGAAAGATTTGAAGAAGTTCCTCGTGGTTATTGCTGGCTTGTGGCTCACGTCTATTCTGGGAAGCTGCTGCAACTTCTTGACCTTG TTTTACACTGCTTTCGTTCTACTGCACACCGTACCTCTGGTCTACGAGAAGTACGAGGACAAAATCGACCCGATTGCAGAGAAGGCAACCATCGAAATCA AAAAGCAGTATGCAGTGTTTGATTCCAAGGTTCTCAGTAAGATCCCGAAATCAGTTGCTGAACTTAAAGCGAAGAGGGTTTAG
AA sequence Show only first row Show all	>Lus10041080 pacid=23179914 polypeptide=Lus10041080 locus=Lus10041080.g ID=Lus10041080.BGIv1.0 annot-version=v1.0 MAEEHSESPMESVIDKISEKIHSHDSSSSSSSDSDSDSEKKAASDSSASVKDKIFRLFGRERPVHHVLGGGKAADVLLWRNKKATGVILGAATLIWVLFE LVEYHLLTLVCHTLILSLALLFLWSNAHTLINKTPPRIPEVHLPEEPVLQAAAGLRIEINQALSVLRNIAAGKDLKKFLVVIAGLWLTSILGSCCNFLTL FYTAFVLLHTVPLVYEKYEDKIDPIAEKATIEIKKQYAVFDSKVLSKIPKSVAELKAKRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46170			Reticulon family protein (.1.2...		Lus10041080 [exp]	0	1
AT2G46170			Reticulon family protein (.1.2...		Lus10036405 [exp]	1.0	0.9638
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10015078 [exp]	6.7	0.8901
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10038216 [exp]	8.8	0.8763
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	9.7	0.8831
AT5G08570			Pyruvate kinase family protein...		Lus10017364 [exp]	12.7	0.8390
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	13.9	0.8913
AT1G34350			unknown protein		Lus10017068 [exp]	15.0	0.8725
AT1G11840		ATGLX1	glyoxalase I homolog (.1.2.3.4...		Lus10003523 [exp]	19.4	0.8397
AT2G34560			P-loop containing nucleoside t...		Lus10023310 [exp]	19.6	0.8757
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006240 [exp]	23.0	0.8680

Compare expression of checked genes

Lus10041080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.