Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46210 578 / 0 AtSLD2 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) AT3G61580 561 / 0 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT4G30950 49 / 5e-06 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036408 [exp] 754 / 0 AT2G46210 700 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Lus10031102 [exp] 560 / 0 AT3G61580 659 / 0.0 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) Lus10035482 [exp] 559 / 0 AT3G61580 659 / 0.0 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G091800 [exp] 615 / 0 AT2G46210 721 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.002G165800 [exp] 614 / 0 AT2G46210 728 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.006G228200 [exp] 536 / 0 AT2G46210 620 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Lus10041083 pacid=23179712 polypeptide=Lus10041083 locus=Lus10041083.g ID=Lus10041083.BGIv1.0 annot-version=v1.0 ATGTTACCGAATGGGTCAAGATCCATCCCGGCGGCGAGGTCGCCATCCTCAACCTCGCCGGCCAGGACGTCACCGATGCCTTCATCGCTTACCATCCGGG GACCGCCTGGGGGTACCGCCTGGAAGAATCTCGACAACCTCTTCACCGGCTACCACATCAAGGACTACACCGTCTCCGACGTCTCCAAGGACTACCGTCG CCTTGCCACGGAGTTCTCGAAGCTAGGGTTGTTCGACAAAAAAGGACACGTCGCCGTCTGCGCATTAGCGGCCGTTGCGGTGCTCTTCTCGCTGGTTGTA TACGGCGTCGTCCGGTGCGATTCCCCGTGGGCCCACTTCGGATCGGCTATCCTGCTAGGGTTTCTGTGGATCCAGAGCGCGTACGTGGGTCACGATTCGG GTCATTACCAGGTCATGACGACCCGAGGATACAACAAACTCGCGCAGCTCCTCGCCGGAAACTGCCTCACCGGAATCAGCATCGCGTGGTGGAAGTGGAC TCACAACGCGCACCACCTCGCCGTGAATAGCCTCGATTACGATCCAGATCTACAGCACATCCCGGTCTTCGCCGTCTCCAACCGCCTCTTCGATTCGATC AGATCCGTTTTCTACGGCCGTAGCTTGAGCTTCGATCCGGTAGCCAGATTCCTCGTGAGCTACCAGCACTGGACGTTCTACCCGGTAATGTGCGTTGCGA GAGTAAATCTCTACCTCCAGACGTTCATCCTCCTCCTCACCCCCAGTCGAAACGTTCCCGACAGAGCTCTCAACATCGCCGGAACGATGGTGTTCTGGAC CTGGTTCCCCTTCCTCGTGGCCTGCCTACCAAACTGGCCGGAGCGGTTCATGTTCGTGCTGACTTCGTTCGCGGTTTGCTCAGTCCAGCACGTTCAATTC TGCCTCAACCATTTCCCTGCGAATCATTACATGGGGCCTCCAGGAGCCAACGACTGGTTCGAGAAGCAGACGAAAGGAACGGTGGACATCTCTTGCCCGT CGTGGATGGATTGGTTCCACGGAGGATTACAGTTCCAGCTGGAGCATCATTTGTTCCCTAGGTTGCCCAGATGCCAGCTGAGGAAAGTTTCGCCGGTGGT TCAAGATCTTTGCAAGAAACACAACCTGCCGTACAGGAGCTACTCGTTCTTGGAAGCTAATGTTTGTACGATCAAGACGTTGAGGGAGGTGGCTTTGCAG GCTAGGGATCTGGCGAACCCCGTTCCTAAGAATCTGGTATGGGAAGCCGTTCATACACATGGTTGA
AA sequence Show only first row Show all	>Lus10041083 pacid=23179712 polypeptide=Lus10041083 locus=Lus10041083.g ID=Lus10041083.BGIv1.0 annot-version=v1.0 MLPNGSRSIPAARSPSSTSPARTSPMPSSLTIRGPPGGTAWKNLDNLFTGYHIKDYTVSDVSKDYRRLATEFSKLGLFDKKGHVAVCALAAVAVLFSLVV YGVVRCDSPWAHFGSAILLGFLWIQSAYVGHDSGHYQVMTTRGYNKLAQLLAGNCLTGISIAWWKWTHNAHHLAVNSLDYDPDLQHIPVFAVSNRLFDSI RSVFYGRSLSFDPVARFLVSYQHWTFYPVMCVARVNLYLQTFILLLTPSRNVPDRALNIAGTMVFWTWFPFLVACLPNWPERFMFVLTSFAVCSVQHVQF CLNHFPANHYMGPPGANDWFEKQTKGTVDISCPSWMDWFHGGLQFQLEHHLFPRLPRCQLRKVSPVVQDLCKKHNLPYRSYSFLEANVCTIKTLREVALQ ARDLANPVPKNLVWEAVHTHG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10041083 [exp]	0	1
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Lus10036408 [exp]	1.0	0.9094
AT1G61900			unknown protein		Lus10020048 [exp]	1.7	0.8688
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Lus10017759 [exp]	2.0	0.8878
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10014312 [exp]	4.2	0.8194
AT1G07590			Tetratricopeptide repeat (TPR)...		Lus10042757 [exp]	7.7	0.8220
AT5G62890			Xanthine/uracil permease famil...		Lus10004228 [exp]	8.0	0.8213
AT5G67470		ATFH6	ARABIDOPSIS FORMIN HOMOLOG 6, ...		Lus10019298 [exp]	10.0	0.8469
AT1G64650			Major facilitator superfamily ...		Lus10003219 [exp]	11.0	0.8390
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Lus10018651 [exp]	11.2	0.8410
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	12.3	0.8422

Compare expression of checked genes

Lus10041083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.