Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39780 300 / 2e-102 RNS2 ribonuclease 2 (.1.2) AT1G14220 115 / 1e-30 Ribonuclease T2 family protein (.1) AT2G02990 112 / 2e-29 RNS1, ATRNS1 ribonuclease 1 (.1) AT1G26820 104 / 1e-26 RNS3 ribonuclease 3 (.1) AT1G14210 83 / 2e-18 Ribonuclease T2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036409 [exp] 240 / 1e-78 AT2G39780 276 / 5e-94 ribonuclease 2 (.1.2) Lus10012823 [exp] 106 / 5e-27 AT2G02990 334 / 2e-117 ribonuclease 1 (.1) Lus10030468 [exp] 105 / 1e-26 AT2G02990 341 / 3e-120 ribonuclease 1 (.1) Lus10027978 [exp] 100 / 5e-25 AT1G14220 330 / 4e-116 Ribonuclease T2 family protein (.1) Lus10003110 [exp] 74 / 3e-15 AT1G26820 142 / 4e-42 ribonuclease 3 (.1) Lus10035881 [exp] 68 / 3e-13 AT2G02990 130 / 4e-37 ribonuclease 1 (.1) Lus10035882 [exp] 67 / 1e-12 AT1G14220 128 / 1e-36 Ribonuclease T2 family protein (.1) Lus10015409 [exp] 62 / 5e-11 AT1G14220 79 / 8e-18 Ribonuclease T2 family protein (.1) Lus10022385 [exp] 58 / 4e-09 AT1G26820 92 / 2e-21 ribonuclease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G174400 [exp] 319 / 1e-109 AT2G39780 371 / 5e-131 ribonuclease 2 (.1.2) Potri.008G086700 [exp] 107 / 1e-27 AT2G02990 310 / 8e-108 ribonuclease 1 (.1) Potri.010G168700 [exp] 107 / 2e-27 AT2G02990 337 / 2e-118 ribonuclease 1 (.1) Potri.008G086800 [exp] 100 / 1e-24 AT1G26820 288 / 1e-99 ribonuclease 3 (.1) Potri.010G168600 [exp] 39 / 0.0008 AT1G26820 147 / 1e-45 ribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00445 [flax] [poplar] Ribonuclease_T2 Ribonuclease T2 family
Representative CDS sequence Show only first row Show all	>Lus10041084 pacid=23179635 polypeptide=Lus10041084 locus=Lus10041084.g ID=Lus10041084.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCCGTCCCCGTCAAAAGCACTGTGCTCCTGCTGCTGCTCTTCATTCAGCTGTCTCTTTCTGTCTCCCTTCCCCGCTCCTTCTCTGGTGCGA TAGCTCAGCTGAAAGAGGAGGAAAACGACGTGGAGCTGGATGAGCTGCAGGTGGTGACCAGTTCGAACCAGAGAGAGTTCGATTACTTCAAGCTCGCTCT TCAATGGCCCGGCACTTACTGCCGATTCACCAAAAAATGCTGCTCTAAGAACGCTTGTTGCCGAGGGGAGAACTCCCCTGCTGAATTTACTATTCATGGG TTATGGGCTGATTACAATGACGGAAGCTGGCCTTCCTGTTGCGGCGGATCCAATTTTAATGAGAAAGAGCTCTCCACATTACTTGAGCCGCTGAACAAGT ATTGGCCAACTCTGAGTTGTGGAAAATCATCAACCTGCCATGGGGTGAAAGGATCCTTCTGGGCACATGAGGTGTTTTGCCCATTCTGTTCTTTGCCTTT CTCCTGTACTGTACTTGGATTCAAAACTAACTACAATTTCTGTCTTCCCGGACTTCTTGGTGAGAAGCATGGGACGTGCTCTTCATCTGTAACAGGAGAT GAATACAATTACTTTCTGACGGGTCTCAATGTCTACTTCAAATACAACGTCACTCAAGTACTATTTGAAGCTGGATATGTTCCTTCTAATACCGAGAAGT ACCCTGTTGGAGGCATTATTTCTGCAATTCAGAATGCTTTCCTCGAAACCCCGGAACTCGTTTGCTCCAAGGGGGCTCTGGAGGAAATCCACTTATGTTT CGACAAAAAATTCAAGCCGAGGGACTGTACGTTGGGATCAAAGCTGAAACATGGCAAGTATTCTTCGTCGAGTTCATGTCCAGAATACGTTAGCTTGCCT GCCTCGTCCGGCATCAATGGGAAATATATGGACGCCTAA
AA sequence Show only first row Show all	>Lus10041084 pacid=23179635 polypeptide=Lus10041084 locus=Lus10041084.g ID=Lus10041084.BGIv1.0 annot-version=v1.0 MASSVPVKSTVLLLLLFIQLSLSVSLPRSFSGAIAQLKEEENDVELDELQVVTSSNQREFDYFKLALQWPGTYCRFTKKCCSKNACCRGENSPAEFTIHG LWADYNDGSWPSCCGGSNFNEKELSTLLEPLNKYWPTLSCGKSSTCHGVKGSFWAHEVFCPFCSLPFSCTVLGFKTNYNFCLPGLLGEKHGTCSSSVTGD EYNYFLTGLNVYFKYNVTQVLFEAGYVPSNTEKYPVGGIISAIQNAFLETPELVCSKGALEEIHLCFDKKFKPRDCTLGSKLKHGKYSSSSSCPEYVSLP ASSGINGKYMDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39780		RNS2	ribonuclease 2 (.1.2)		Lus10041084 [exp]	0	1
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10039861 [exp]	4.5	0.7709
AT5G20790			unknown protein		Lus10007378 [exp]	4.6	0.7759
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10008479 [exp]	8.9	0.7490
AT1G69340			appr-1-p processing enzyme fam...		Lus10030413 [exp]	9.5	0.7330
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10028656 [exp]	9.9	0.7063
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10015919 [exp]	14.4	0.7650
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10011847 [exp]	17.5	0.7223
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10037836 [exp]	24.3	0.7179
AT1G71940			SNARE associated Golgi protein...		Lus10014818 [exp]	25.1	0.7316
AT3G02870		VTC4	Inositol monophosphatase famil...		Lus10039046 [exp]	32.0	0.6887

Compare expression of checked genes

Lus10041084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.