Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48340 344 / 1e-114 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036410 [exp] 676 / 0 AT5G48340 461 / 6e-159 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G174300 [exp] 390 / 3e-132 AT5G48340 419 / 5e-142 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03343 [flax] [poplar] SART-1 SART-1 family
Representative CDS sequence Show only first row Show all	>Lus10041085 pacid=23179566 polypeptide=Lus10041085 locus=Lus10041085.g ID=Lus10041085.BGIv1.0 annot-version=v1.0 ATGGCAGGCGCCATTATAGTCAAAAGAAGCCATGTGCTCGAGAAATTCTTTCTAGGAAATTCTGGGAGGGTATCAGAGTGGTTTGCTAACTTTGCTGATG GTACTGGATTGGAGCATAAGAAGGGCGCCAAAGCTTTGTTCCAGTTTGCTTTTGTAAACCGGGACATCTGTTGGGAGGAACTTAAGTGGAAAGGAAAGCA TGGACAATCACCTGCTGTGGTTCCAACGAAACCCCATTACCTTCTTGACTTAGATGTGCAGAGAACAGTGGAAAATTTCCTGGAATACGTTCCTGAATTT TGGTCATCCAGTAATTTTGCAGAGTCACTTAAAGATGGTGAGATTCTGCAAACTGATCCAGAGTTCTTCTTGGAGTTCTTTATAGGATTGATGTTCAGGG ATGATTCCAGGGATGTGTGGGAAATGGTGAGTGAGTTTCTTATGGAGGAGCCTTTCTCTTCTCTGTGTCAACAACACCTTCTTATCATTCTTGAAGAGAA GGAGCTTATTACTTTCCTTGAGTTTCTTCAAAGATATCTGAATGCCGGGTCGTCTTCTTGGCTTGAGATCGTGATTTATGAACGATGTAGTGATTGGTCC ATCGATCAGCTTCTACTGCTAAACGGGATTGTAGATCATGGACGCCAGCTTCTGAGGCTTGTCCATGACGAGGACTCCGACAAGAGATTGAAGATCAAGG AAATTGCTTCTCAGGTGTGCAGAATCTCAAACAATGCCAGCACCTTGGCTCCTCTGCTAAAGGAATGCTCAAAGAGGAAAGCAAGAGAAGGAATCGAACT ATTGGCGATTCAGTCGTTCATCATTCACTATTCATTATCAGAGAAGTGCAGGACCGCTGAGGCATGGGAATCTTTGTTTTCTGAGAATGGGGTAGCTTTC AGGAGCACTAACAAATACGCCCTGCTGGATGTGGATGGAGTAGAAGAAAGCGATTCGGAATTGAGCAGTGATGGAGTAATGAAGAGGAAGAAGAAGCACA AGAAGAATAAGGACAAGAGAAAGAGGAGGAGAAGAGACATAGATGACGATGATGATGAGTTGGCGGAGTTCGGTGGTTCCAGTGATAGAACGAATCGGCA AGCTACTGGTGTTAGCTGGTTGCTATCTACGGACAACTTTTCAGCAGCATGGAAGACAGTTGATTTGCCGGAGCACCTTCCGGGCTGGTGTTTCTCAACG TGGATGAAATTTGTATCTTTGAACAAGAGCCTTACCTGA
AA sequence Show only first row Show all	>Lus10041085 pacid=23179566 polypeptide=Lus10041085 locus=Lus10041085.g ID=Lus10041085.BGIv1.0 annot-version=v1.0 MAGAIIVKRSHVLEKFFLGNSGRVSEWFANFADGTGLEHKKGAKALFQFAFVNRDICWEELKWKGKHGQSPAVVPTKPHYLLDLDVQRTVENFLEYVPEF WSSSNFAESLKDGEILQTDPEFFLEFFIGLMFRDDSRDVWEMVSEFLMEEPFSSLCQQHLLIILEEKELITFLEFLQRYLNAGSSSWLEIVIYERCSDWS IDQLLLLNGIVDHGRQLLRLVHDEDSDKRLKIKEIASQVCRISNNASTLAPLLKECSKRKAREGIELLAIQSFIIHYSLSEKCRTAEAWESLFSENGVAF RSTNKYALLDVDGVEESDSELSSDGVMKRKKKHKKNKDKRKRRRRDIDDDDDELAEFGGSSDRTNRQATGVSWLLSTDNFSAAWKTVDLPEHLPGWCFST WMKFVSLNKSLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48340			unknown protein		Lus10041085 [exp]	0	1
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10013263 [exp]	1.4	0.9529
AT5G48340			unknown protein		Lus10036410 [exp]	2.0	0.9419
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	2.4	0.9472
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10016885 [exp]	3.2	0.9417
AT2G42130			Plastid-lipid associated prote...		Lus10016263 [exp]	4.5	0.9260
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10023647 [exp]	5.3	0.9228
AT1G30140			unknown protein		Lus10024751 [exp]	5.7	0.9447
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	5.7	0.9281
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	7.3	0.9204
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	8.7	0.9203

Compare expression of checked genes

Lus10041085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.