Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12790 434 / 1e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) AT5G22370 172 / 5e-52 QQT1, EMB1705 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G21800 81 / 3e-17 QQT2 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036411 [exp] 540 / 0 AT4G12790 444 / 5e-156 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Lus10018675 [exp] 187 / 1e-57 AT5G22370 493 / 9e-178 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10007747 [exp] 181 / 6e-56 AT5G22370 396 / 1e-140 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019602 [exp] 82 / 2e-17 AT4G21800 545 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10040022 [exp] 82 / 3e-17 AT4G21800 542 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G174200 [exp] 471 / 4e-170 AT4G12790 432 / 5e-155 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5) Potri.014G015700 [exp] 184 / 9e-57 AT5G22370 462 / 6e-166 QUATRE-QUART 1, EMBRYO DEFECTIVE 1705, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G148000 [exp] 85 / 1e-18 AT4G21800 555 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G103000 [exp] 84 / 2e-18 AT4G21800 527 / 0.0 quatre-quart2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF03029 [flax] [poplar] ATP_bind_1 Conserved hypothetical ATP binding protein
Representative CDS sequence Show only first row Show all	>Lus10041086 pacid=23179547 polypeptide=Lus10041086 locus=Lus10041086.g ID=Lus10041086.BGIv1.0 annot-version=v1.0 ATGGGCTATGCACAGCTTGTCATTGGCCCCGCTGGCAGCGGGAAGTCCACTTATTGCTCTAGCTTGCACCAACATTGTGAAACCATTGGCCGGTCCATTC ATATTGTGAACCTAGATCCTGCAGCAGAAAACTTTGACTATCCTGTCGCTGTGGATATTAGAGAGCTCATTAATTTGGATGATGTCATGGAGGAACTTGG TCTGGGTCCGAATGGTGCTCTTATGTACTGCATGGAGTATCCTTTTAGTTTATACTGTGGCCTTTCTCCTGAACTTGAGGACAACCTGGATGATTGGTTA ACAGAGGAGCTGGACAACTACATGGATGATGACTACCTAGTTTTTGATTGCCCAGGCCAGATAGAACTCTTTTCACATGTTCCGGTGCTTCGTAACTTTG TGCAACATTTACAGCGGAAGAATTTCAAAGTTTGTGTTGTATACTTGCTTGATTCACAGTTCATTACAGATGTGACCAAGTTCATTAGTGGCTGTATGGC ATCCCTCTCTGCAATGGTCCAGCTTGAACTGCCCCATGTTAATATCCTCTCCAAAATGGACCTGGTGAAGAACAAACGGGACCTCGAAGACTACCTCAGG CCAGAGCCTACAACTCTTTTGGCTGAGCTCAATCAACGCATGGGTCCTCAGTTCTTAAAGCTAAACAAAGCTTTGATTGAACTGGTCGACAGCTACAGTA TGGTCAGCTTTATGCCACTTGACTTGAGGAAAGAAAGCAGCATTCAGTATGTGCTGTCTCAAATCGATACCGCGATTCAATACGGAGAAGATGCAGACGT GAAGATCAGAGATTTTGATGAGCCTGAAGATGATGACTAG
AA sequence Show only first row Show all	>Lus10041086 pacid=23179547 polypeptide=Lus10041086 locus=Lus10041086.g ID=Lus10041086.BGIv1.0 annot-version=v1.0 MGYAQLVIGPAGSGKSTYCSSLHQHCETIGRSIHIVNLDPAAENFDYPVAVDIRELINLDDVMEELGLGPNGALMYCMEYPFSLYCGLSPELEDNLDDWL TEELDNYMDDDYLVFDCPGQIELFSHVPVLRNFVQHLQRKNFKVCVVYLLDSQFITDVTKFISGCMASLSAMVQLELPHVNILSKMDLVKNKRDLEDYLR PEPTTLLAELNQRMGPQFLKLNKALIELVDSYSMVSFMPLDLRKESSIQYVLSQIDTAIQYGEDADVKIRDFDEPEDDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	0	1
AT4G12790			P-loop containing nucleoside t...		Lus10036411 [exp]	1.4	0.9518
AT1G11340			S-locus lectin protein kinase ...		Lus10018406 [exp]	1.7	0.9403
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040538 [exp]	2.0	0.9353
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	2.8	0.9440
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10037630 [exp]	3.9	0.9288
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	4.2	0.9277
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	4.5	0.9188
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10027126 [exp]	4.9	0.9257
AT3G16565			alanine-tRNA ligases;nucleic a...		Lus10000503 [exp]	5.5	0.9277
AT3G29170			Eukaryotic protein of unknown ...		Lus10028939 [exp]	8.5	0.8915

Compare expression of checked genes

Lus10041086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.