Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2) AT5G23340 120 / 1e-30 RNI-like superfamily protein (.1) AT4G15475 118 / 6e-29 F-box/RNI-like superfamily protein (.1) AT5G25350 92 / 5e-20 EBF2 EIN3-binding F box protein 2 (.1) AT3G58530 89 / 2e-19 RNI-like superfamily protein (.1) AT5G01720 80 / 4e-16 RNI-like superfamily protein (.1) AT1G47056 76 / 7e-15 VFB1 VIER F-box proteine 1 (.1) AT4G07400 74 / 5e-14 VFB3 VIER F-box proteine 3 (.1) AT5G67250 74 / 5e-14 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT2G25490 73 / 1e-13 FBL6, EBF1 EIN3-binding F box protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036412 [exp] 730 / 0 AT3G07550 417 / 4e-145 RNI-like superfamily protein (.1.2) Lus10013444 [exp] 125 / 3e-32 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 124 / 6e-32 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 111 / 2e-26 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 98 / 6e-22 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10029869 [exp] 86 / 4e-18 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10002014 [exp] 86 / 5e-18 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10018737 [exp] 85 / 1e-17 AT1G47056 638 / 0.0 VIER F-box proteine 1 (.1) Lus10011506 [exp] 85 / 1e-17 AT5G67250 566 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G056400 [exp] 467 / 3e-165 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.005G088800 [exp] 112 / 2e-27 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 94 / 1e-20 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 91 / 1e-19 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 89 / 5e-19 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G195800 [exp] 86 / 1e-18 AT3G58530 477 / 9e-170 RNI-like superfamily protein (.1) Potri.005G141800 [exp] 87 / 2e-18 AT5G67250 570 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.018G027700 [exp] 85 / 1e-17 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.007G075600 [exp] 79 / 2e-16 AT5G23340 291 / 5e-97 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 80 / 4e-16 AT5G27920 631 / 0.0 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041087 pacid=23179606 polypeptide=Lus10041087 locus=Lus10041087.g ID=Lus10041087.BGIv1.0 annot-version=v1.0 ATGAATCTGCCTGATGATTGCCTCTCCACGATCTTCCACAAGCTCGAATGCAGTTCCGATCGGGAATCATTCGGGCTGACTTGCCACCGCTGGTTAAACA TCCAGAACACGAATCGAAAATCTCTGCAGTTCTCTTGCTCTTTCACCATCGCCCACCGTTCCTCCTCCACCCTCCTTGTCAACAATTTCCATATCGACAA GCTACTCACTCGCTTCCAGCATTTGGAGCACCTTTCCTTATCCGGCTGCACCGAGCTTCTGGACCCGGACCTAAACCAGTTACAACTCCACGGTTCAAAC TTGCGCACGATCAATCTGGATGGCTGTTTCAAGATCACAGATTCTGGTCTTGAATTGATTGCCACCAGTTGCCCTTCCTTAGCCGCCATTAGTCTCTATA GATGCAACATTACTGACGAAGGCTTACGAACTCTAGGCAACCGGTGCCCTTCTCTAAAACGCGTAAACCTCGTGTATTGCCATCTTATCTCTGACGATGG TCTAAGAGCTATCTCCACAGGCTGCACTGAGCTTCAAGCAGTTGAGATCTCTTGCTGCAGGGGAGTGTATGGCACTGGATTCACCGGATGTCCGCCGACT TTATGTTACATAGATGCTGAATACTGCAAGATTGGAACAGAAGGGATTGCAGGAATTGTCAGTGGAGGTGGAATTGAATACTTGAACATTTCGGGTTTGA ACTGGTCGGATAACCAAGATGCATTAGCACCAATAGGGTTATTGGCTTCCAGACTCAAAATCCTGAACCTCAGGATGTGCAGGAATATTGGTGATGAGTC CATAACGGCAATAGCAAAGGGATGCCATGTACTTGAGGAATGGAACTTGGCATTGTGCCATGAAGTTAAGGTTGCGGGATGGCAGTCGATCGGGGCCAGC TGCAACAGGCTCGAGAGACTTCACGTGAATAGATGTCGTAATTTGTGTGATTTGAGCTTGCAGGCATTGAGGGAAGGATGCAGGAGGCTTAAGATATTGT ACATTGGCCGTACTGGTACTTTCTCTCCCACTGCATTGGAAGTTTTCAGAATGCATAGGGGCAGTGTTGAAATTAGAGATGAAGAGGTCATGTGTATTGG CCCTGACTGGACCCTTAGATGA
AA sequence Show only first row Show all	>Lus10041087 pacid=23179606 polypeptide=Lus10041087 locus=Lus10041087.g ID=Lus10041087.BGIv1.0 annot-version=v1.0 MNLPDDCLSTIFHKLECSSDRESFGLTCHRWLNIQNTNRKSLQFSCSFTIAHRSSSTLLVNNFHIDKLLTRFQHLEHLSLSGCTELLDPDLNQLQLHGSN LRTINLDGCFKITDSGLELIATSCPSLAAISLYRCNITDEGLRTLGNRCPSLKRVNLVYCHLISDDGLRAISTGCTELQAVEISCCRGVYGTGFTGCPPT LCYIDAEYCKIGTEGIAGIVSGGGIEYLNISGLNWSDNQDALAPIGLLASRLKILNLRMCRNIGDESITAIAKGCHVLEEWNLALCHEVKVAGWQSIGAS CNRLERLHVNRCRNLCDLSLQALREGCRRLKILYIGRTGTFSPTALEVFRMHRGSVEIRDEEVMCIGPDWTLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07550			RNI-like superfamily protein (...		Lus10041087 [exp]	0	1
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Lus10005490 [exp]	1.0	0.8209
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10014018 [exp]	1.4	0.7696
AT5G51180			alpha/beta-Hydrolases superfam...		Lus10042993 [exp]	8.3	0.6781
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10007763 [exp]	10.9	0.7001
AT4G32600			RING/U-box superfamily protein...		Lus10033075 [exp]	14.1	0.7254
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	15.3	0.6974
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10030537 [exp]	16.7	0.7430
AT5G03330			Cysteine proteinases superfami...		Lus10013813 [exp]	17.0	0.7260
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	23.9	0.7422
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10027666 [exp]	26.6	0.7056

Compare expression of checked genes

Lus10041087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.