Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07660 585 / 0 Kinase-related protein of unknown function (DUF1296) (.1) AT3G13222 100 / 7e-22 GIP1 GBF-interacting protein 1 (.1) AT3G13990 94 / 2e-19 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) AT1G55820 88 / 7e-18 Kinase-related protein of unknown function (DUF1296) (.1) AT4G18150 72 / 9e-13 Kinase-related protein of unknown function (DUF1296) (.1) AT5G46380 66 / 7e-11 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29370 65 / 2e-10 Kinase-related protein of unknown function (DUF1296) (.1) AT1G29350 65 / 2e-10 Kinase-related protein of unknown function (DUF1296) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036414 [exp] 1443 / 0 AT3G07660 656 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015640 [exp] 85 / 1e-16 AT3G13990 561 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10004604 [exp] 80 / 5e-15 AT1G29370 644 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10037658 [exp] 78 / 2e-14 AT3G13990 560 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Lus10025382 [exp] 77 / 4e-14 AT1G29350 513 / 4e-171 Kinase-related protein of unknown function (DUF1296) (.1) Lus10004543 [exp] 72 / 1e-12 AT1G29370 641 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Lus10007338 [exp] 54 / 7e-09 AT1G29370 71 / 1e-15 Kinase-related protein of unknown function (DUF1296) (.1) Lus10020762 [exp] 56 / 2e-07 AT1G29370 70 / 4e-12 Kinase-related protein of unknown function (DUF1296) (.1) Lus10015262 [exp] 52 / 2e-06 AT1G29370 574 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G217000 [exp] 912 / 0 AT3G07660 600 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.014G169900 [exp] 910 / 0 AT3G07660 491 / 1e-160 Kinase-related protein of unknown function (DUF1296) (.1) Potri.011G079800 [exp] 196 / 2e-52 AT3G07660 125 / 2e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G370900 [exp] 189 / 5e-50 AT3G07660 124 / 3e-29 Kinase-related protein of unknown function (DUF1296) (.1) Potri.003G063300 [exp] 162 / 4e-41 AT3G13990 619 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.001G170700 [exp] 103 / 2e-22 AT3G13990 557 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1), Kinase-related protein of unknown function (DUF1296) (.2) Potri.011G078800 [exp] 85 / 1e-16 AT1G29350 650 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.001G353100 [exp] 83 / 4e-16 AT1G29350 649 / 0.0 Kinase-related protein of unknown function (DUF1296) (.1) Potri.002G059300 [exp] 67 / 5e-11 AT1G29350 172 / 3e-44 Kinase-related protein of unknown function (DUF1296) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF06972 [flax] [poplar] DUF1296 Protein of unknown function (DUF1296)
Representative CDS sequence Show only first row Show all	>Lus10041089 pacid=23179611 polypeptide=Lus10041089 locus=Lus10041089.g ID=Lus10041089.BGIv1.0 annot-version=v1.0 ATGAGCAGTGGCGTAGCTGGTGATAGGGTTAGGGTTTCAATCCCAGGGAACGTCCGTAAGACGATCCAGAACATCAAGGAGATCACCGGAAATCACAGTG ACGAAGAAATTTACGCAATGCTCAAGGAGTGTTCAATGGATCCCAACGAAACCACCCAGAAGCTCCTCCTTCTTGATCCATTTCATGAAGTTAAAAGGAA GCGTGACAAAAAGAAAGAGAATGTCAACAATAAAGAGGCTGGAGATTCACGGTGGAGATCTGGTACCCAAGGGCGGGGAAGTAGGGGTGGTCGGATGAAC TTTTATCCTCGTTATTCCTCTCATGATGGAGGTAATGGCCGAGCTTCTGCTCCTGGAAGGGAAAGCAGTACCAATCAACCTACAGAAAAAGGTGTTGGCT CATCGTTACCTACTCCCCAGGAAAAAGTTAAAGAAGCAGCTGCCCCAGAAAGCACTGTCGCTGTTGTGGCTAATGGTCCTATTGGTGTAGCTTCTGGCAC TACTGGTGAACCAGCAGATTCTATAACTGCGGATAAAACCCTTGTAGTTGCACATGGAACTGCTGACACACTTGGAGAGCCTGTGCCAAACAGTAACAGC TCATCAGTGTCAGTGAATGCAGTGTCTTCATCAACTGTCTGTTTCTCATCTTCAGATCCTGTACTAGTGCCATCTAATGATTCAAGGGTTGCTGGTACAG TGGATACAATCAAGTGTGAAGTGCCGAGCCATAGAGTTCTAGGTGACACAAATGCTGTTCCTTATCCTGAGAAACCAGCTTCAGCAGTTTCAGGGAAGAA TGTAAACAAATCCCATGTTATTGGAAAGGGCCAATTCAGTGAATCTTCCCAACCCTCATCTGTATCAGTTAATGCTGTCTCTTCTGGTAGTAGGCCATCC TCTAATTATGGTAGCAGGGCACAACAAGCTATTGGTCCTCAAAAAGCTGGTGCTACTAAGGAGTGGATACCAAAGCCAACAAACCCCAACGTAGCTCAGG TTTCTAGCACAACTGTTTTGCCGGAGGTGCCTAGTGTGCCAGTTAAAACTGTTCCTCAGTCGCAACTGACGCCAGGATGTGATAAGGATGCTCCAGCTTC CAATTCGAACAAGTTGAAGGAGTTGAATCTTCCACAACGACAGCATGTTATTATTCCCAACCACATCCATGTTCCAGAATCAGAGAGAACGAAGTTGAGT TTTGGAAGTTTTGATACTAGCTTTGGAGTAGCTAAAAGCTCTGCCAGTGGACAAGAGAGTGAAAAAAGTTCCACTCCTTTGTCTGAAGCAACACAAAGTG TTGAGGAAGTCGTGGATGAGCCAACAGCATGTCAAGATACAGTTGCAGTTGCTGAGGAGGGAGCTTATACTGATCAGCCCCATTCGCCGTCTCCTGTACC AGAAAATTTGCAGAGTGATGGTGATGTTTCTGCCAGTGCAGCACCTGATTACAGTGAGGGCAAACAAGACAACGTGGTGTCTGCTGGTCATCCATACCCT GGAGTCCATTCTCCGCCAAGCTATTTTGGAATTGTGCATCCTGTACTAGGGGGCCAGATTGCACAATTTGAAAACTCAGAATCCCAACCACGTGATGCGT CTCGTATGCCTAGCTTTGTGGTTCAACAGCCATTTGATCCAGCAAGTTACTATGCACAATTCTATCGTCCCGGTGCTGATAATGATGGCCGTGTTTCTCC TTTTCCTTCCCCTGGAGTTGCAGCCAAGTATAATGGGAATGTTGCAGTGTTACCTCCCCATACTTCTCAGTCTACTCGAGAGGGCTCAAACTCGTTGGTC CTGTCCACAGCAGGTCCTACAGCCCTGGCCACACAAGCTGCTGGGCTAATGCAGAGTTCTATTTCTGCAACTCAACAGCCATTACCTGTCTTCCGTCCAC CAACTGGGTTGCATATGGCCCACTATCCACCAAACTACATTCCATATGGGCACTACTTCTCCCCATTCTATGGCCCACCACCAGGCATCCATCAGTTCTT AAGCAATGGTGCATTCCCTCAGCAACCCCAAGCAGGCAACATATTTCCAGCTCCACCTGCTGCAGCTGCTGCAGGTGTCAAATTCTCAGTGCCACAGTTC AAAGCCGGGACTAATGTGGGAAACTCTACTCACATTGGAATGCCAAGTGGCTATGGACAGTATGCTTCGTCGCCAGCTGGTTATAATCCCAGTTCTGCTG GTGCTGGGGTCAATTCAACCACAAATGAGGATCTTGGTGCATCCCAGTTGAAGGAAAACAACGTCTATATTTCTGGGCAGCAGAGTGAGGGTTCTGCTGT GTGGATTACTGCTCCAGGCCGCGATATCTCTACGATGCCAGCAAGTTCATTCTACAACCTTCCTCAGGGTCAGCACGTAGCTTTCGCCCCGCAACAGGCT AGCCATGGGCCTTTTGCGGGTATCTATCACCCGGCTCAAGCAGTATCTGCTGCAGGAGTCCATCAACTTCTACAACAGTCTCAAGCAATGGGCGGTGCGG TTGACATGGCAGGATCTGCTGCAAGTGTTTACCAGCAGCAGCCTCAGCATCAACAGGTGAACTGGCCGCCAAGTAACTTTTGA
AA sequence Show only first row Show all	>Lus10041089 pacid=23179611 polypeptide=Lus10041089 locus=Lus10041089.g ID=Lus10041089.BGIv1.0 annot-version=v1.0 MSSGVAGDRVRVSIPGNVRKTIQNIKEITGNHSDEEIYAMLKECSMDPNETTQKLLLLDPFHEVKRKRDKKKENVNNKEAGDSRWRSGTQGRGSRGGRMN FYPRYSSHDGGNGRASAPGRESSTNQPTEKGVGSSLPTPQEKVKEAAAPESTVAVVANGPIGVASGTTGEPADSITADKTLVVAHGTADTLGEPVPNSNS SSVSVNAVSSSTVCFSSSDPVLVPSNDSRVAGTVDTIKCEVPSHRVLGDTNAVPYPEKPASAVSGKNVNKSHVIGKGQFSESSQPSSVSVNAVSSGSRPS SNYGSRAQQAIGPQKAGATKEWIPKPTNPNVAQVSSTTVLPEVPSVPVKTVPQSQLTPGCDKDAPASNSNKLKELNLPQRQHVIIPNHIHVPESERTKLS FGSFDTSFGVAKSSASGQESEKSSTPLSEATQSVEEVVDEPTACQDTVAVAEEGAYTDQPHSPSPVPENLQSDGDVSASAAPDYSEGKQDNVVSAGHPYP GVHSPPSYFGIVHPVLGGQIAQFENSESQPRDASRMPSFVVQQPFDPASYYAQFYRPGADNDGRVSPFPSPGVAAKYNGNVAVLPPHTSQSTREGSNSLV LSTAGPTALATQAAGLMQSSISATQQPLPVFRPPTGLHMAHYPPNYIPYGHYFSPFYGPPPGIHQFLSNGAFPQQPQAGNIFPAPPAAAAAGVKFSVPQF KAGTNVGNSTHIGMPSGYGQYASSPAGYNPSSAGAGVNSTTNEDLGASQLKENNVYISGQQSEGSAVWITAPGRDISTMPASSFYNLPQGQHVAFAPQQA SHGPFAGIYHPAQAVSAAGVHQLLQQSQAMGGAVDMAGSAASVYQQQPQHQQVNWPPSNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07660			Kinase-related protein of unkn...		Lus10041089 [exp]	0	1
AT3G07660			Kinase-related protein of unkn...		Lus10036414 [exp]	1.0	0.9773
AT4G16180			unknown protein		Lus10017062 [exp]	2.0	0.9532
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	4.2	0.9169
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10010782 [exp]	4.9	0.9265
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10024704 [exp]	7.2	0.9204
AT4G24290			MAC/Perforin domain-containing...		Lus10000175 [exp]	9.8	0.8845
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	10.0	0.8961
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10043258 [exp]	11.0	0.9007
AT4G34110		PABP2, PAB2, AT...	ARABIDOPSIS POLY\(A\) BINDING ...		Lus10002835 [exp]	12.1	0.9159
AT5G53620			unknown protein		Lus10008846 [exp]	13.3	0.9098

Compare expression of checked genes

Lus10041089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.