Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12710 359 / 1e-122 ARM repeat superfamily protein (.1) AT3G03440 175 / 5e-51 ARM repeat superfamily protein (.1) AT5G14510 147 / 3e-41 ARM repeat superfamily protein (.1) AT3G01400 139 / 4e-38 ARM repeat superfamily protein (.1) AT3G54790 132 / 7e-34 ARM repeat superfamily protein (.1.2) AT5G67340 128 / 3e-32 ARM repeat superfamily protein (.1) AT5G58680 124 / 3e-32 ARM repeat superfamily protein (.1) AT2G23140 127 / 5e-32 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT1G23030 100 / 8e-23 PUB11 ARM repeat superfamily protein (.1) AT1G71020 98 / 2e-22 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036415 [exp] 593 / 0 AT2G04280 828 / 0.0 unknown protein Lus10033593 [exp] 217 / 2e-66 AT3G03440 395 / 4e-135 ARM repeat superfamily protein (.1) Lus10017635 [exp] 206 / 7e-63 AT3G03440 409 / 2e-141 ARM repeat superfamily protein (.1) Lus10002521 [exp] 173 / 8e-51 AT5G14510 281 / 1e-93 ARM repeat superfamily protein (.1) Lus10022275 [exp] 163 / 5e-47 AT5G14510 290 / 1e-96 ARM repeat superfamily protein (.1) Lus10007738 [exp] 140 / 2e-38 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10024899 [exp] 142 / 4e-37 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 139 / 4e-36 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 125 / 4e-31 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G170100 [exp] 466 / 6e-165 AT4G12710 422 / 3e-147 ARM repeat superfamily protein (.1) Potri.017G128100 [exp] 232 / 2e-73 AT3G03440 380 / 2e-130 ARM repeat superfamily protein (.1) Potri.004G088800 [exp] 231 / 1e-72 AT3G03440 389 / 7e-134 ARM repeat superfamily protein (.1) Potri.001G344200 [exp] 179 / 3e-53 AT5G14510 310 / 5e-105 ARM repeat superfamily protein (.1) Potri.005G225400 [exp] 137 / 1e-35 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.014G016400 [exp] 129 / 4e-34 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.002G037700 [exp] 133 / 6e-34 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.007G051000 [exp] 130 / 3e-33 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 129 / 9e-33 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G118800 [exp] 123 / 5e-32 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10041090 pacid=23179563 polypeptide=Lus10041090 locus=Lus10041090.g ID=Lus10041090.BGIv1.0 annot-version=v1.0 ATGGTACAGGAAGAGGAAGACGACGCGTCGGCGGAACCTCCGGCCATCAGAGACCAACAACAAGAAGCTTGGAATCTTCGTAAGGATTCACTCATCCTCG CACTCGCCAACAACCTTATCACCGGAGATCTCTCCTCCCAGATACAAGCTGCTCGTGACATCCGTAAGCTCGTTAGAAAATCCTCCTCCCCTAAAACTCG CTCCAAAATCGCCGCAGCCGGTGTTATCCCTCCCTTGATTCTCATGCTCCTCTCCCACGATCTCGACGCTCGCGAGGCTTCTCTCCTTGCTCTCCTTAAT CTCGCCGTCAGAAACGAGAGGAACAAGGTCAGCATAGTAACAGCAGGTGCTATCCCTCCTCTAGTGGAAATTCTCAAGTTTCAAAGTGACAGCTTAAGGG AACTTGCAACAGCTGCACTTTTAACACTCTCAGCTGCTGAACCCAACAAGACAGTTATTGCAGATTCAGGAGCTTCACGGTTTCTAATTCAGATACTTAG CCTGGGGAGCGTTCAAGGGAAAGTCGATGCTGTAACAGCACTTCACAATCTCTCCACCTGCACTGAGAATCGGCATCAAATACTTGACGCGAAAGCAGTC CCCCCTCTCATTAGCCTCCTTAAAGAATGCAAGAAATATTCAAAGTTTGCCGAGAAAGTAACTGCACTTCTGGAAATACTTGCCAACTGCGAAGAAGGGC GAATCGCTATAACAGATTCAGAAGGTGGGATTCTAACTATAGTAGAGACAGTTGAAGATGGATCCCTTTCAAGTACAGAACATGCAGTTGGTGCGTTGCT TTCCTTGTGCCAAAGTAGCCGAGATAAGTACAGGGTACTGATTCTCAACGAAGGTGCCATACCTGGCCTTCTGCGCCTTACAGCTGAAGGCACCACAAAA GCTCAAGAAAGAGCTCGGACACTTCTTGACTTGCTCAGAGACACTCCCGAGGAGAAGAGGTTAGCATCGTCTGTTATGAAAAAAATCGTTTACAATATCG CTGAAAGGGTTGACGGAGCGGATAAAGCTGCTGAAACAGCCAAGAAATTACTGGAGGACATGGTTCAAAGAAGCAAGGAGCTAAGCATGTAA
AA sequence Show only first row Show all	>Lus10041090 pacid=23179563 polypeptide=Lus10041090 locus=Lus10041090.g ID=Lus10041090.BGIv1.0 annot-version=v1.0 MVQEEEDDASAEPPAIRDQQQEAWNLRKDSLILALANNLITGDLSSQIQAARDIRKLVRKSSSPKTRSKIAAAGVIPPLILMLLSHDLDAREASLLALLN LAVRNERNKVSIVTAGAIPPLVEILKFQSDSLRELATAALLTLSAAEPNKTVIADSGASRFLIQILSLGSVQGKVDAVTALHNLSTCTENRHQILDAKAV PPLISLLKECKKYSKFAEKVTALLEILANCEEGRIAITDSEGGILTIVETVEDGSLSSTEHAVGALLSLCQSSRDKYRVLILNEGAIPGLLRLTAEGTTK AQERARTLLDLLRDTPEEKRLASSVMKKIVYNIAERVDGADKAAETAKKLLEDMVQRSKELSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12710			ARM repeat superfamily protein...		Lus10041090 [exp]	0	1
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Lus10004607 [exp]	1.4	0.9012
AT1G71180			6-phosphogluconate dehydrogena...		Lus10001349 [exp]	1.7	0.8728
					Lus10031351 [exp]	5.5	0.8568
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	7.1	0.8886
AT1G31870			unknown protein		Lus10033140 [exp]	10.5	0.8700
AT1G78310			VQ motif-containing protein (....		Lus10010346 [exp]	11.2	0.8230
AT5G45190			Cyclin family protein (.1.2)		Lus10036192 [exp]	11.5	0.8522
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005159 [exp]	12.0	0.8199
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Lus10043106 [exp]	13.0	0.8343
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	15.0	0.8727

Compare expression of checked genes

Lus10041090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.