Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04280 744 / 0 unknown protein AT4G12700 737 / 0 unknown protein AT4G08810 448 / 1e-153 SUB1 calcium ion binding (.1) AT2G41150 88 / 1e-18 unknown protein AT3G56750 86 / 6e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036415 [exp] 906 / 0 AT2G04280 828 / 0.0 unknown protein Lus10039176 [exp] 473 / 4e-163 AT4G08810 845 / 0.0 calcium ion binding (.1) Lus10013761 [exp] 472 / 1e-162 AT4G08810 836 / 0.0 calcium ion binding (.1) Lus10039175 [exp] 338 / 2e-114 AT4G08810 463 / 5e-163 calcium ion binding (.1) Lus10008860 [exp] 94 / 2e-20 AT2G41150 545 / 0.0 unknown protein Lus10023250 [exp] 92 / 6e-20 AT2G41150 547 / 0.0 unknown protein Lus10018111 [exp] 89 / 8e-19 AT2G41150 555 / 0.0 unknown protein Lus10022403 [exp] 87 / 4e-18 AT2G41150 560 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G170200 [exp] 836 / 0 AT2G04280 862 / 0.0 unknown protein Potri.001G005500 [exp] 473 / 3e-163 AT4G08810 762 / 0.0 calcium ion binding (.1) Potri.003G219200 [exp] 211 / 7e-63 AT4G08810 451 / 1e-155 calcium ion binding (.1) Potri.016G035600 [exp] 86 / 8e-18 AT3G56750 549 / 0.0 unknown protein Potri.006G040400 [exp] 82 / 1e-16 AT3G56750 567 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041091 pacid=23179661 polypeptide=Lus10041091 locus=Lus10041091.g ID=Lus10041091.BGIv1.0 annot-version=v1.0 ATGTTAGCTAACCAGACAGCTTTCAACACTTTCATCAACATAAGCGATGTGGTGGTACCTAAGATTGATGAAGAAGGTGGTGGTGGTGTCATCAATGGTG AGGTGGAAGTCAAGACTGAGAGCTGCGACGGGCCTATAGATTGCAGGGATCCAGAGGTGTTCCATTTGTTGATGAAGAAGGCAATTGAGCAGTTTAAAGA CATTCACTTCTACAGATTTGGTAAGCCTGTTCGTGGATCTAACGACACTACTTGTGATATGGCTTGGAGATTTAGGCCTAAGGAAGGTAAAGCTGCTTCC TTTTATAAAGATTACAGGCGGTTTACGATAGATCGATCGGAGAACTGTACATTTAGTGTTGTGGGGATTGGGGATTATCATACTGGTGTGAATGCCAGGA AGAGGAAGAAGCGTTCGAAACCCGGTTTCGAGAAGAAACCGGCTGACTCTTCCACATTGTTGTTGCCTGTGGTGGGGGAGACTGTGAATGATGCACTTCC TGTAGTGGAGTCCGAGAATTCGTTCAGCAAAGGAAAGTACTTGATCTATAACGGCGGTGGTGATCGATGCAAGGATATGAATCATTACCTGTGGAGTTTC TTGTGTGCATTGGGCGAGGCGCAGTACTTGAATCGAACTCTGGTTATGGATTTGACCATCTGTTTGAACTCGATGTACACTTCTTCGAACCAAGATGAGG AAGGGAAAGACTTTCGGTTTTACTTTGATTTCGAGCATTTGAACGAGGCGGCATCGGTTTTGGACCAGACTCAGTTTTGGGACGATTGGGGTAAGTGGCA CAAACAGGATCGGTTAAGTCTTCATCTCGTCGAGGATCATAAAGTTACTCCTATGAAGCTTGCAGCAGAAGTTACAGACACTTTAATCATGAGGAAGTTT GGGTCTGTCGAGCCTGATAATTACTGGTACAGAGTGTGTGAGGGGGAAACCGAGTCGGTTATTCAACGTCCGTGGCATTTGGTATGGAAATCCAGAAGGT TGATGGATATTGTGTCGGCGATTTCTTCGAAACTGAACTGGGATTACGATGCAGTTCACATCGAAAGAGGGGAGAAAGCAAAGAACTCGGGGCTATGGCC GAATCTCGCAGCTGATACTTCTCCCAATGCGCTTCTTTCGACGTTGGCTGATAAAGTCGAAGAAGGTAGGCAACTGTACATTGCAACGAACGAACCAGAT GTTTCGTTTTTCGACCCGTTGAAAGACAAGTACTCTACGCATTTCCTCGACGAGTACAAGGAACTTTGGGACGAGAACAGCGAGTGGTACTCGGAGACAA CAAAGCTTAACAGAGGGGTGCCGGTCGAGTTTGATGGCTACATGAGGGTCTCTGTGGACACAGAAGTTTTTCTTAGAGGTAAGAAACAGATTGAGACGTT CAACGATCTGACGAATGACTGCAAAGATGGCGTCAACACTTGCAACGCAGCAGCAAGTTGA
AA sequence Show only first row Show all	>Lus10041091 pacid=23179661 polypeptide=Lus10041091 locus=Lus10041091.g ID=Lus10041091.BGIv1.0 annot-version=v1.0 MLANQTAFNTFINISDVVVPKIDEEGGGGVINGEVEVKTESCDGPIDCRDPEVFHLLMKKAIEQFKDIHFYRFGKPVRGSNDTTCDMAWRFRPKEGKAAS FYKDYRRFTIDRSENCTFSVVGIGDYHTGVNARKRKKRSKPGFEKKPADSSTLLLPVVGETVNDALPVVESENSFSKGKYLIYNGGGDRCKDMNHYLWSF LCALGEAQYLNRTLVMDLTICLNSMYTSSNQDEEGKDFRFYFDFEHLNEAASVLDQTQFWDDWGKWHKQDRLSLHLVEDHKVTPMKLAAEVTDTLIMRKF GSVEPDNYWYRVCEGETESVIQRPWHLVWKSRRLMDIVSAISSKLNWDYDAVHIERGEKAKNSGLWPNLAADTSPNALLSTLADKVEEGRQLYIATNEPD VSFFDPLKDKYSTHFLDEYKELWDENSEWYSETTKLNRGVPVEFDGYMRVSVDTEVFLRGKKQIETFNDLTNDCKDGVNTCNAAAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04280			unknown protein		Lus10041091 [exp]	0	1
AT2G04280			unknown protein		Lus10036415 [exp]	1.0	0.9633
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	2.4	0.9118
AT5G17630			Nucleotide/sugar transporter f...		Lus10019209 [exp]	3.9	0.8951
AT1G02816			Protein of unknown function, D...		Lus10010297 [exp]	5.7	0.9067
AT2G20690			lumazine-binding family protei...		Lus10017000 [exp]	6.3	0.8779
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	7.5	0.8995
AT4G05400			copper ion binding (.1.2)		Lus10008331 [exp]	10.2	0.8909
AT4G28230			unknown protein		Lus10031619 [exp]	10.8	0.8826
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10042618 [exp]	11.1	0.7901
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Lus10016417 [exp]	11.2	0.8328

Compare expression of checked genes

Lus10041091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.