Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76310 167 / 2e-50 CYCB2;4 CYCLIN B2;4 (.1) AT1G20610 167 / 2e-50 CYCB2;3 Cyclin B2;3 (.1) AT1G16330 105 / 1e-26 CYCB3;1 cyclin b3;1 (.1) AT4G35620 91 / 6e-22 CYCB2;2 Cyclin B2;2 (.1) AT2G26760 91 / 1e-21 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT3G11520 91 / 1e-21 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT2G17620 88 / 8e-21 CYCB2;1 Cyclin B2;1 (.1) AT5G06150 88 / 1e-20 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT1G20590 83 / 3e-20 Cyclin family protein (.1) AT4G37490 86 / 4e-20 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009596 [exp] 114 / 9e-30 AT1G16340 376 / 3e-128 Aldolase superfamily protein (.1.2.3.4) Lus10036080 [exp] 101 / 1e-25 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10026803 [exp] 99 / 2e-24 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10001765 [exp] 97 / 2e-23 AT1G79500 499 / 2e-172 Aldolase-type TIM barrel family protein (.1.2.3.4.5) Lus10039033 [exp] 85 / 2e-19 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1) Lus10027331 [exp] 84 / 2e-19 AT5G06150 262 / 2e-84 cyclin B 1;2, Cyclin family protein (.1) Lus10008103 [exp] 84 / 3e-19 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10028544 [exp] 82 / 2e-18 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10029700 [exp] 81 / 4e-18 AT1G44110 544 / 0.0 Cyclin A1;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G251400 [exp] 184 / 7e-57 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.002G010000 [exp] 177 / 3e-54 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.005G100000 [exp] 162 / 2e-48 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.009G165800 [exp] 159 / 2e-47 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.008G083200 [exp] 110 / 2e-28 AT1G16330 497 / 1e-168 cyclin b3;1 (.1) Potri.010G173200 [exp] 108 / 1e-27 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.016G033000 [exp] 97 / 4e-24 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.001G272000 [exp] 97 / 5e-24 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.009G066600 [exp] 92 / 5e-22 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.006G035200 [exp] 91 / 1e-21 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041092 pacid=23179715 polypeptide=Lus10041092 locus=Lus10041092.g ID=Lus10041092.BGIv1.0 annot-version=v1.0 ATGCTTTACCGGAAAGCTGAGGTTTCCAGCTCTGTTGCACCTAACTACACGGCACAGGAAGTTGATATCAATGAAAGGATGAAAGGCATTCTTATTGACT GGTTGATTGAGGTGCACTACAAGTTTGAGTTGATGGAGGACACTCTTTACCTTACAGTGAATCTGATTGACAGATTCTTGTCGATTCATTCAGTTGTGAG AAAGAAACTGCAACTGGTTGGAGTGACAGCCTTATGTTTTCATGAGAAAGCTGCCCAATCTGACAAGAAGCTGAAGCTTCTGCCATTCTTTCTGATAGAG CTGTGCTTAGTTGAGTATGAAATGCTCAAGTACCCACCTTCTTTGCTATCTGCTGCTGCAATCTATACAGCGCAGACAACACTCATGAGTGGTACACAGC ACTTGCTACCCAGAAGAGCAGCTTCTGGAATGTTCAAAGTTAATAGTTGGATTTCATCAGGGTTCTGGGTCAACGAGGATGACTGGTGTCCACAGGAAAT ACAGCACTTCAAAGTTTTGACATGA
AA sequence Show only first row Show all	>Lus10041092 pacid=23179715 polypeptide=Lus10041092 locus=Lus10041092.g ID=Lus10041092.BGIv1.0 annot-version=v1.0 MLYRKAEVSSSVAPNYTAQEVDINERMKGILIDWLIEVHYKFELMEDTLYLTVNLIDRFLSIHSVVRKKLQLVGVTALCFHEKAAQSDKKLKLLPFFLIE LCLVEYEMLKYPPSLLSAAAIYTAQTTLMSGTQHLLPRRAASGMFKVNSWISSGFWVNEDDWCPQEIQHFKVLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35620		CYCB2;2	Cyclin B2;2 (.1)		Lus10041092 [exp]	0	1
					Lus10032314 [exp]	5.3	0.7445
AT2G37980			O-fucosyltransferase family pr...		Lus10028253 [exp]	5.8	0.7197
AT4G14805			Bifunctional inhibitor/lipid-t...		Lus10010576 [exp]	8.2	0.6210
AT1G80930			MIF4G domain-containing protei...		Lus10011226 [exp]	12.2	0.6947
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Lus10011710 [exp]	13.6	0.6928
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10014057 [exp]	16.6	0.7039
AT3G05260			NAD(P)-binding Rossmann-fold s...		Lus10021931 [exp]	18.5	0.6011
					Lus10004853 [exp]	19.2	0.6674
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Lus10005194 [exp]	20.3	0.6674
					Lus10000273 [exp]	21.4	0.6674

Compare expression of checked genes

Lus10041092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.