Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04270 926 / 0 RNEE/G RNAse E/G-like (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036417 [exp] 1626 / 0 AT2G04270 974 / 0.0 RNAse E/G-like (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G170300 [exp] 1062 / 0 AT2G04270 1009 / 0.0 RNAse E/G-like (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF00686 [flax] [poplar] CBM_20 Starch binding domain CL0369 [flax] [poplar] PF10150 [flax] [poplar] RNase_E_G Ribonuclease E/G family
Representative CDS sequence Show only first row Show all	>Lus10041094 pacid=23179535 polypeptide=Lus10041094 locus=Lus10041094.g ID=Lus10041094.BGIv1.0 annot-version=v1.0 ATGGCGGCCTTTGAGTATCATCAACTCCAGCTTCCTCCTGAAAAGTTCATGGAAGTTTCCGAGGCTTGTTCTCGTTTTACCCATCACCATTTTCTCCCTC CCCGCACTCTCCCTTGTTTTCTCGCCTCACATAAACCTTTTCCATCATGCATGTGCCGACGGTTACCGCTGGAAAATGCGTTGAAAGTTGGGCTCCGTTC GAGTTCGAGGTCTCGTTCATGTTTCAGAATTCCGGTGAAGTCTGCAAAGAAAGGCGGTTTATGTATTCCGTCGGAAGGACTGTGTGAGGTAGTTTGGAAT ATAGAAGCTGATTTGGAAGATGGTCAGCATCTGTATCTTTCAGGGGAACTTACTTCCCTTGGTTGTTGGCAGACTGATAAGGCCATCCGAATGAGTCCTA CAGAACACACTAATTTGTGGCGAGCTCAAGTGAAGATGCCTTGTGGTGTGAACTTCAAATATAATTATTTCCTGAGAAAAGAAAGCTCAAAGTCATCTGA AATCAAGTGGAGAACAGGTCCTGAATTTTCCGTGTCAGTACCCTCGTCCAATGCAAAACAGGATAGGGAGGTTTTGGTGAGGGATTCATGGATGAAGAAG AATAACACTGCAATGGCTTCTCCAACTCAGGGATGGGATACTTGGATTGAAGATGCACATGTGACAGTCCGACCTTTGCCTTCCAATGATGAACTTGAGA CCCTGAACACAATTATGCTTGACGTAAAAGAAGCAACCAAGTGGAAAGTCAAGGATAGATTACGTAGTCGTGATGAAGATACAACCACTGGTGGGTATTA TGATTTGGAGTCTGCTATATTTGAAAGAGACCAACCTGTTGAGGAACCATGGTTAGTCCAATCAGCCACTGTATTTGTGGTTGGTGAAGAGAAGTCTATT CCTAAAACATCAGGAAGTGTAGAGGATGATGTTGTCTCAAACCTGGTCTCTGCATACTGCAATTGCAGAGCTATAGTCAAGTTGCCACCTGTAAATGGGA GCAATCTGATTTCGAAGAAAGATTTGGTCGAGACGATGATACTGATTAATTCTTCTGTATGCACAATGCAAAGGATTGCAGTATTAGAAGATGGGAAATT GGTTGAGCTGCTACTAGAACCTGTTAAAACAGATGCTCAGTGTGATAGCGTGTATTTAGGAACTGTTACAAAACTTGCCCCACATATGAGTGGTGCATTT GTACAGATAGGAAGCCAGAGATTCGCCTTCATGGCCATACAACAAAACAGAGGACCATTTATATTTCCACCCTTCCGTCAAAAGAACAACAAGGGAGAGG AAAATGGTTCGGTGCTTGAAGCCTTTGAAGAAGAACAGCCTGCTGTTAGTGAGGATGAACACAGTTTACCTGATCTAAAAGCCATTGATGATATCGTAGA ATTTATCTCTCAGGATGAATTGGTTAATGATGAGGAGCAGGATCTTGATGATGATTGTGATACGCCAGAGGAAAAGGTAAATGTTAATGGCAGCATAGTT GATCATGGGGGACTGGAAACTCACGTTGGGAAATTCTTGGATTTAAAGAACCATCTGCAAGCTGAAACAACTGGAGGTACCTTTGGTTCTTCGATATCTC ATTTATACGATGACGGTTATACATCAAGCAATGGAAACAAGTGGGGCCATGTCCGCAGAGGCACCAAGATAATTGTACAAGTTGTCAAAGAGGGATTGGG TACAAAAGGCCCTACCGTTACTGCTCATCCACAACTACGGAGCAGGTTCTGGATACTGAGCACTTGCTGTGACAGAATTGGAGTTTCACGAAAGCTCTCA GAATTTGAGCGTTCACGTTTAAGAGTCATAGCAAAGACTTTGAAACCACCAGGATTTGGTGTAACTGTGAGGACTGTTGCTGCTGGCCATTCCTTGGAGG AACTACAAAAAGACTTACAAAGTTTGCTTGCAACTTGGAAAGATATAGTAGAACGTGCAAAATCCTCTGCTCTTGCTGCCGATGAAGGCATTGCTGGGAC AATTCCTGTCATACTGCACAGGGCCAAGGGACAAACGCTCTCGGTTGTGCAGGACTACTTCAATGATAAGGTTACAAACTATCTTCAAGACATTGCTCCT CATCTGTGTAATCGGGTTGAGTTGCATGATAAAAGGATTCCTCTTTTTGATGAATTCTGTATTGAAGAAGAGATTGATAACATGCTCAGTAAAAGAGTTC AACTATCAGATGGTGGCTCCCTGGTAATCGAACAAACAGAGGCTTTGGTCTCGATTGATGTGAATGGTGGACATGTGATGCTTCGTGAAAGGACTTCACA AGAGAAAGCTGTTTTTGAAGTCAACCTTGCAGCTGCAAAGCAAATTGCAAGGGAGCTGCGTCTTAGAGATATTGGTGGCATCATTGTGGTAGACTTTATA GACATGGAAGATGCCTCACATAAGAAACTTGTATATGAAGAAATGAAGAGAGCTGTGGAGCGTGACCGGTCTGTAGTGAATGTCTTTGAATTATCAAGGC ACGGGCTTATGGAAATAACTAGAAAGAGGGTTCGACCAAGCGTGACTTTTATGATTAGCGAACCTTGCTCTTGCTGTCACGCCACTGGAAGGGTTGCAGC ACTAGAGACATCCTTTTCGAAGATAGAACAACAAATTTGCCGGTTGCTCGTAATGATGGAAACTAAAGCAGACCCTGAAAACCCGAAGACATGGCCAAGA TTTATCTTGAGGGTCGACCAGCACATGTCTGACTACTTGACTTCTGGGAGAAAGACGAAACTTGCAATCCTGAGCAGTTCTCTCAAAGTCTGGATACTTT TGAAGGTTGCTAGAGATTTCACAAGGGGGTTATTTGAAGTGAAACCCATTACGGATGAGACGACAACAGATAGCAGCAAAAGCCAACACCAGATTTCCAT ACAAGTAATCAAACGAGCCGAAGCCAGAAGGAGCAATTCTGGCAGGAACTTGACTGTCTTCCCTGTTAATAAACCCAACACCGGTAGAAAATGA
AA sequence Show only first row Show all	>Lus10041094 pacid=23179535 polypeptide=Lus10041094 locus=Lus10041094.g ID=Lus10041094.BGIv1.0 annot-version=v1.0 MAAFEYHQLQLPPEKFMEVSEACSRFTHHHFLPPRTLPCFLASHKPFPSCMCRRLPLENALKVGLRSSSRSRSCFRIPVKSAKKGGLCIPSEGLCEVVWN IEADLEDGQHLYLSGELTSLGCWQTDKAIRMSPTEHTNLWRAQVKMPCGVNFKYNYFLRKESSKSSEIKWRTGPEFSVSVPSSNAKQDREVLVRDSWMKK NNTAMASPTQGWDTWIEDAHVTVRPLPSNDELETLNTIMLDVKEATKWKVKDRLRSRDEDTTTGGYYDLESAIFERDQPVEEPWLVQSATVFVVGEEKSI PKTSGSVEDDVVSNLVSAYCNCRAIVKLPPVNGSNLISKKDLVETMILINSSVCTMQRIAVLEDGKLVELLLEPVKTDAQCDSVYLGTVTKLAPHMSGAF VQIGSQRFAFMAIQQNRGPFIFPPFRQKNNKGEENGSVLEAFEEEQPAVSEDEHSLPDLKAIDDIVEFISQDELVNDEEQDLDDDCDTPEEKVNVNGSIV DHGGLETHVGKFLDLKNHLQAETTGGTFGSSISHLYDDGYTSSNGNKWGHVRRGTKIIVQVVKEGLGTKGPTVTAHPQLRSRFWILSTCCDRIGVSRKLS EFERSRLRVIAKTLKPPGFGVTVRTVAAGHSLEELQKDLQSLLATWKDIVERAKSSALAADEGIAGTIPVILHRAKGQTLSVVQDYFNDKVTNYLQDIAP HLCNRVELHDKRIPLFDEFCIEEEIDNMLSKRVQLSDGGSLVIEQTEALVSIDVNGGHVMLRERTSQEKAVFEVNLAAAKQIARELRLRDIGGIIVVDFI DMEDASHKKLVYEEMKRAVERDRSVVNVFELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRVAALETSFSKIEQQICRLLVMMETKADPENPKTWPR FILRVDQHMSDYLTSGRKTKLAILSSSLKVWILLKVARDFTRGLFEVKPITDETTTDSSKSQHQISIQVIKRAEARRSNSGRNLTVFPVNKPNTGRK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10041094 [exp]	0	1
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10020325 [exp]	1.0	0.9706
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10033127 [exp]	1.4	0.9570
AT4G21770			Pseudouridine synthase family ...		Lus10007657 [exp]	2.2	0.9536
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10024297 [exp]	2.4	0.9567
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10014623 [exp]	4.0	0.9456
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Lus10013408 [exp]	4.2	0.9455
AT2G04270		RNEE/G	RNAse E/G-like (.1.2.3.4.5)		Lus10036417 [exp]	4.6	0.9476
AT2G13440			glucose-inhibited division fam...		Lus10026055 [exp]	4.7	0.9448
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	5.7	0.9559
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Lus10036651 [exp]	7.7	0.9377

Compare expression of checked genes

Lus10041094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.