Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48240 214 / 3e-66 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036418 [exp] 490 / 4e-174 AT5G48240 243 / 1e-78 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G170500 [exp] 249 / 5e-80 AT5G48240 219 / 6e-70 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07890 [flax] [poplar] Rrp15p Rrp15p
Representative CDS sequence Show only first row Show all	>Lus10041095 pacid=23180005 polypeptide=Lus10041095 locus=Lus10041095.g ID=Lus10041095.BGIv1.0 annot-version=v1.0 ATGGACGGTCCCGACATTCGTCCGGCTTCCACTCAGGCAAAGAGAAAGGTCCACGTCAGAGTGATTGGAGTGGCGAGAAGAGAAGCGTGGGGATTCTGGA GAAAGGGATTCTCCCAAGTGAAGAAAAAACGGAACAGCAGTGAACCACTAAACCCTAAAGGCAGCTGCTTCAACCCCAAAGGCTACTACTTTATCTCTGC TGCGCATTCGAGGGCTCCAGAGCTTCGTCACCCGCCATTAATCAAAGCTTATTTCACAATAGGAATTGAGAAGTTTCTCCCAGCCCCCCATAGAATGGCC GAGGTAGCCCCCCAGGTTCAAGAATCCCAAACCACAATGAACAAGCGGAAATCAGGGCGCAACAAGGCCGGCAAAGCTAGGAAAAAGCGGAAGCAGTTTT CCGGCACCACGGGGGAGCGAGTGAAGAAAATTGATCCGAAACTGAAGAAGTTTCTCCGCAAGAAGGCTCGCGACTACGATTCCGATAACGAAGAAGAAAA AGAAGAACTGGAAGAGAAGAGAGGAGATGAAGTAGTAGTAGATGATGACGCTTTTCAAGTTTCCAAGGATGAAGGTTTGAATTTGAATAATGATGAAAAA GAAGCCGATGAACCCGGGTCGGATAATGATGTATACGACGTCGGTGCAATTCTGCCTGGAATCACGAAGCTGAGTGAGGGCTGTAGAGCTTTCAGTGTTG CTTTCAATAGTATAATCAAGAAGAATGTATCTGAAGATCCACTGGGACCTGTGCTATCAGGACACAAAAAGCTAGTAGCGGAGAAGCTTGCTGAGGAGAA TGCTGAAAGAAAAGCCAAAGGAGACGCCAAAAAAGAGAAGAAAATTGTTGCTGAGAAGGGGCATAAGGTGCCAGCTGAATTCTTGGTCACCCATGAAAAG TTCTTGATTAGTGTAGCTACAAAGGGAGCTGATCGTGTTTTTTGGTTGCATGTATCGCGTGTGATGCCAGTGGTGAAGTTGTTCAATGCAGTTAACAAGG CACAGGTTGCGCAGAAAGGATTAAATCCGTTGAGGTCAAAAGATGCAAAAGTTATCAACAAAAGAAGGAAGCAGGCGTTCTTCTCAGAGATACGCAAAAC TTCGTCCACTGATTCCAAGGTCAATGCATCAGAAGGCAACGCAGATGGAGCAGCTCCATCATGGGCTCCCCTCCGCGATAACTATATGCTAACGAATCCC TCGTTGAAAGATTGGGATAAGAATCCGGAATCTGCTAGCATAGGAGATGGCAGTGGGAAAATGTCATCTGACAGTAGTTCAGATGAGGATTGA
AA sequence Show only first row Show all	>Lus10041095 pacid=23180005 polypeptide=Lus10041095 locus=Lus10041095.g ID=Lus10041095.BGIv1.0 annot-version=v1.0 MDGPDIRPASTQAKRKVHVRVIGVARREAWGFWRKGFSQVKKKRNSSEPLNPKGSCFNPKGYYFISAAHSRAPELRHPPLIKAYFTIGIEKFLPAPHRMA EVAPQVQESQTTMNKRKSGRNKAGKARKKRKQFSGTTGERVKKIDPKLKKFLRKKARDYDSDNEEEKEELEEKRGDEVVVDDDAFQVSKDEGLNLNNDEK EADEPGSDNDVYDVGAILPGITKLSEGCRAFSVAFNSIIKKNVSEDPLGPVLSGHKKLVAEKLAEENAERKAKGDAKKEKKIVAEKGHKVPAEFLVTHEK FLISVATKGADRVFWLHVSRVMPVVKLFNAVNKAQVAQKGLNPLRSKDAKVINKRRKQAFFSEIRKTSSTDSKVNASEGNADGAAPSWAPLRDNYMLTNP SLKDWDKNPESASIGDGSGKMSSDSSSDED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48240			unknown protein		Lus10041095 [exp]	0	1
AT5G48240			unknown protein		Lus10036418 [exp]	2.4	0.9295
AT3G13990			Kinase-related protein of unkn...		Lus10037658 [exp]	2.4	0.9246
AT4G25730			FtsJ-like methyltransferase fa...		Lus10023555 [exp]	3.2	0.9246
AT3G13990			Kinase-related protein of unkn...		Lus10015640 [exp]	11.0	0.8892
AT3G15460			Ribosomal RNA processing Brix ...		Lus10027900 [exp]	11.2	0.9117
AT1G30960			GTP-binding family protein (.1...		Lus10032427 [exp]	11.4	0.8996
AT4G25730			FtsJ-like methyltransferase fa...		Lus10040439 [exp]	11.6	0.9165
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10013988 [exp]	12.2	0.9201
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Lus10004272 [exp]	14.7	0.9092
AT5G14610			DEAD box RNA helicase family p...		Lus10032135 [exp]	15.5	0.8728

Compare expression of checked genes

Lus10041095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.