Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48250 318 / 3e-107 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT3G07650 306 / 8e-103 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT3G21880 178 / 8e-53 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT4G15250 119 / 5e-31 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT2G33500 106 / 1e-25 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT1G68190 105 / 1e-25 CO B-box zinc finger family protein (.1) AT1G28050 103 / 1e-24 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT2G47890 91 / 3e-21 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT5G24930 74 / 2e-14 CO COL4, ATCOL4 CONSTANS-like 4 (.1) AT2G24790 67 / 1e-12 CO COL3, ATCOL3 CONSTANS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036419 [exp] 282 / 9e-93 AT5G48250 332 / 8e-112 B-box type zinc finger protein with CCT domain (.1) Lus10031584 [exp] 112 / 1e-27 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10015098 [exp] 109 / 6e-27 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10002578 [exp] 105 / 8e-25 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10001806 [exp] 102 / 5e-24 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10040900 [exp] 98 / 7e-23 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2) Lus10035257 [exp] 91 / 2e-20 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10039695 [exp] 87 / 6e-19 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1) Lus10034625 [exp] 82 / 8e-17 AT1G68190 182 / 3e-52 B-box zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G170600 [exp] 223 / 1e-69 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.002G214500 [exp] 204 / 4e-62 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.017G039301 [exp] 115 / 6e-29 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1) Potri.001G061800 [exp] 113 / 1e-27 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.007G121200 [exp] 112 / 1e-27 AT3G21880 291 / 1e-95 B-box type zinc finger protein with CCT domain (.1) Potri.003G166000 [exp] 109 / 4e-26 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.008G125200 [exp] 98 / 2e-22 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.014G134601 [exp] 94 / 2e-21 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.002G208100 [exp] 94 / 2e-21 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2) Potri.001G323500 [exp] 91 / 4e-20 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Lus10041096 pacid=23179951 polypeptide=Lus10041096 locus=Lus10041096.g ID=Lus10041096.BGIv1.0 annot-version=v1.0 ATGGGTTACATATGTGATTTCTGTGGGGAGCAGAGGTCAATGGTAAACTGCCGTTCAGATGCTGCTTGCTTATGTTTATCATGTGATAGAAATGTCCACG CTGCAAATGCGCTGTCGAAGCGGCATTCAAGAACCTTACTGTGCGAGAGATGCAGCTCACAGCCTGCGCTAGTTAGGTGTGCGGAAGAGAAGGTTTCTCT ATGTCAGAACTGTAATTGGATGGGTCATGGCGGTGGTTCTTCTTCCAATTCAGCAAGTTCCTCGCACAAGAGGCAGACTATCAATTGTTACTCCGGCTGC CCTTCTGCCTCCGAGCTTTCTTCAATATGGTCCTTCGTTTTGGACTTCCCTGAAGCTGAAACTTCTACAATGTATGAGCAAGGGATGGGTTTAATGAGCA TAGCTGAAAATGTTGCCACAAATAGCTGGCCTTCTTCCAATGATAACCAGAACCAGGGAGGCAGCAATATGACTTCACGTGATGTTGGGAAATCAAGTGT TTGGGACAATGGATCGAGTTTGTTTGGGACAAAAGACATGTCTGTTGCTGATCCTAGCTACCATAGTGGTGCTGCAGCTGAGGGGTCATCTGCTGGACGT ATGAATTCAATGCAGCAGCAGCAGCCGACATGCAGCAATGCAGCATCTGCTGATTCCATCATGAGTACTAAAACCGAACCAGCTGTTTGTCTAACGGGGA GGCAACTCCATTCAAACCTCTCGTTTTCTGGCGTTACTGGGGAAAGTAGCGGTGGAGATTATCAAGATTGTGGAGTTTCTCCAATGCTACTTATGGGAGA GCCTCCATGGGGTTCCCCTTGTGCCGAGGGTTCCCCGTCAGCAAACCGGAGTAATGCTGTGATGCGGTACAAAGAAAAGAAGAAGACACGCAAGTTCGAA AAGAGAGTAAGATATGCTTCCCGCAAAGAAAGAGCTGATGTACGGAAGCGTGTGAAAGGGCGTTTCGTGAAAGCCGGTGAAACATACGATTATGATCCTT TATCTCAAACCAGAAGCTATTAA
AA sequence Show only first row Show all	>Lus10041096 pacid=23179951 polypeptide=Lus10041096 locus=Lus10041096.g ID=Lus10041096.BGIv1.0 annot-version=v1.0 MGYICDFCGEQRSMVNCRSDAACLCLSCDRNVHAANALSKRHSRTLLCERCSSQPALVRCAEEKVSLCQNCNWMGHGGGSSSNSASSSHKRQTINCYSGC PSASELSSIWSFVLDFPEAETSTMYEQGMGLMSIAENVATNSWPSSNDNQNQGGSNMTSRDVGKSSVWDNGSSLFGTKDMSVADPSYHSGAAAEGSSAGR MNSMQQQQPTCSNAASADSIMSTKTEPAVCLTGRQLHSNLSFSGVTGESSGGDYQDCGVSPMLLMGEPPWGSPCAEGSPSANRSNAVMRYKEKKKTRKFE KRVRYASRKERADVRKRVKGRFVKAGETYDYDPLSQTRSY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10041096 [exp]	0	1
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10036419 [exp]	1.0	0.9336
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10015720 [exp]	2.4	0.9116
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10018201 [exp]	2.4	0.8451
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10021629 [exp]	3.5	0.8313
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	4.5	0.8354
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031247 [exp]	5.7	0.8420
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10012545 [exp]	7.7	0.7828
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10040706 [exp]	9.4	0.8220
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031818 [exp]	10.2	0.8088
					Lus10005752 [exp]	10.7	0.7696

Compare expression of checked genes

Lus10041096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.