Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 367 / 1e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18840 355 / 1e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G29760 358 / 2e-114 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 339 / 5e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 333 / 2e-107 MEF21 mitochondrial editing factor 21 (.1) AT2G44880 325 / 7e-104 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G40405 326 / 9e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74630 325 / 7e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 323 / 2e-101 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 318 / 3e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036420 [exp] 417 / 5e-144 AT4G18840 125 / 1e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10036422 [exp] 410 / 8e-142 AT1G59720 166 / 9e-48 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 386 / 3e-126 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 379 / 1e-123 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 368 / 2e-119 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 360 / 1e-116 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 355 / 2e-113 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 346 / 6e-110 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030125 [exp] 330 / 1e-106 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G106500 [exp] 714 / 0 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 388 / 5e-127 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 360 / 2e-115 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 359 / 5e-115 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 358 / 1e-114 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G121400 [exp] 343 / 2e-111 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G035900 [exp] 343 / 5e-111 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.002G258766 [exp] 343 / 6e-111 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.014G046200 [exp] 340 / 3e-109 AT2G44880 676 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G019500 [exp] 340 / 2e-108 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10041097 pacid=23179866 polypeptide=Lus10041097 locus=Lus10041097.g ID=Lus10041097.BGIv1.0 annot-version=v1.0 ATGAGCAGCATCTTCTCATCCGCTTCATTTCTCATCTCACACTCAAAACCTTACGAACTCAGTTGTAGCAGCACTAGTTCATCACTCTCCGCCCCTAAAT CTCAGCCAAGGAAACCAGTTCCCGCCATTTCATTGCTCCAGCTATGCATCGACTACAAGGAGCTACTGCAAGTCCAGGCAATCCTACTCAAGACTTCCCT CATTAAAGAAAAGCACGCTTTCGGCCGTCTCCTCTCCTCTTTCGCCGCTCTCCGTGGCTCTTCCTCCGGCCTCGATCACGCTCAGAAGCTCTTCGATCTC GCAGACATCCCGAGGAACTTCTTCATGTACTACACCTTGATGAGAGCGCAATCCCCGAAAACTGCGTTTCTTCTTTACTCGGACATGGTTTCTGAATACG ATCCGATTGTATCTCCAGACGATTACACTTTCACTTTCGTGTTCTCTGCTTGCGCCAAGTTTCACGGCGTGTCGGAAGGGAAACAGGCTCATGCGCAGAT GGTGAAATCCCCGGTGAAGTTCGGGGTTCATTCGTGGAACTCGTTGATGGATTTCTACGTCAAGATTGGAGAGCCAGGAAATGTAGCGCGCCAATTGTTT GATAGAATCGAGAGCCCCGATGTTGTTTCGTGGAATTGTTTGATCGATGGATATGTTAAATCGGGGGAGCTGAAAACTGCTAGGCAACTGTTCGACGAAA TGCCTCAGAGAGATGTTGTGTCTTGGACGACGATGCTTGCTGCGTATGTCAACGCCGGGTTGCTCTCCTATGCGTCTGACTTGTTCGAGGAAATGCCTGA AAGAAACTTGTTCTCTTGGACTGCTATGATCAACGGCTACATCCAAATGGGATGCTACAGTAAAGCTTTGGATGTTCTGAAACAGATGCAGTCTGCCAAG CTTCCCATGGATAAGGTTGCTATAACCACTTTACTATCCGCTTGTGCAGGATTGGGGGCTTTGGAGCAAGGCTGCTGGCTTCACATGTACGTTGAAAAAC AACGCATCAAGGTCGATGCATATCTATCCACGGCTTTGATCGACATGTACAGCAAATGTGGCAGAATCGACATGGCTAGAAAAGTGTTTAAAGAAACATT AGACAAGAAGGTATCAGTCTGGAACTCCATGTTGGGAGGATTAGGCACACATTCATTCGGACAGGAAGCTGTTAAGCTATTCAAAAAGATGGCAAAGGAC GATCGAGTCGACCCGAATGAGATAACCTACATCAATATTTTGGCAGCTTGCAACCATTCTGGTTTAGTACACGACGGGTTTCGAATCTTTAACAGACTGT TGAAGGATCCGAGAGTAAAGCCATCGATCGAGCATTACGTGTGTCTGATCGGTTTACTGGGTCGAGCCGGGTTGGTGCAGGATGCAGTTGGAATGATTAG TACTATGCCAATGAAAGCTGATGGGGCTATCTGGAGAGCCCTCCTTAGCAACACCTGTAGATCGCACCGGAATGCAGAGCTTGTGGAGGAAATCGAGACG ATTTTGATGGAGATAGAGCCGCTGAATCATACGAATTACGTCCTGGTTTCGAATGCTTACGCACTTGTTAATAGATGGGAAGCTGTTGGGAAGCTCAGGA AGGAGATGAAGGTCAAAGGGTTGGTGAAGACTCCTGGATGCAGCTCGATTGTCGTAGATGGTGGCGTCCATGAGTTCGTGGCAGGCGATGATTTGAACTC GCAGACCAAACCAATTTCCGAGTTGTTGTGTTCAATGGCTAATCACATGAAGCACGATCGATTCAGGGATCTTTAA
AA sequence Show only first row Show all	>Lus10041097 pacid=23179866 polypeptide=Lus10041097 locus=Lus10041097.g ID=Lus10041097.BGIv1.0 annot-version=v1.0 MSSIFSSASFLISHSKPYELSCSSTSSSLSAPKSQPRKPVPAISLLQLCIDYKELLQVQAILLKTSLIKEKHAFGRLLSSFAALRGSSSGLDHAQKLFDL ADIPRNFFMYYTLMRAQSPKTAFLLYSDMVSEYDPIVSPDDYTFTFVFSACAKFHGVSEGKQAHAQMVKSPVKFGVHSWNSLMDFYVKIGEPGNVARQLF DRIESPDVVSWNCLIDGYVKSGELKTARQLFDEMPQRDVVSWTTMLAAYVNAGLLSYASDLFEEMPERNLFSWTAMINGYIQMGCYSKALDVLKQMQSAK LPMDKVAITTLLSACAGLGALEQGCWLHMYVEKQRIKVDAYLSTALIDMYSKCGRIDMARKVFKETLDKKVSVWNSMLGGLGTHSFGQEAVKLFKKMAKD DRVDPNEITYINILAACNHSGLVHDGFRIFNRLLKDPRVKPSIEHYVCLIGLLGRAGLVQDAVGMISTMPMKADGAIWRALLSNTCRSHRNAELVEEIET ILMEIEPLNHTNYVLVSNAYALVNRWEAVGKLRKEMKVKGLVKTPGCSSIVVDGGVHEFVAGDDLNSQTKPISELLCSMANHMKHDRFRDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10041097 [exp]	0	1
AT5G54290		CcdA	cytochrome c biogenesis protei...		Lus10037881 [exp]	8.7	0.8487
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015906 [exp]	13.8	0.8300
AT5G06690		WCRKC1	WCRKC thioredoxin 1 (.1.2)		Lus10017244 [exp]	14.1	0.8452
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10016930 [exp]	21.8	0.8392
AT3G57930			unknown protein		Lus10031806 [exp]	23.7	0.8253
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10002795 [exp]	26.9	0.8364
					Lus10041636 [exp]	31.7	0.8250
AT4G14103			F-box/RNI-like superfamily pro...		Lus10017218 [exp]	32.1	0.7544
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10040901 [exp]	34.0	0.7792
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10032018 [exp]	34.6	0.8185

Compare expression of checked genes

Lus10041097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.