Plant FIBer expression Database

Lus10041098 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07640 204 / 1e-65 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036423
[exp]
428 / 1e-153 AT3G07640 224 / 1e-73 unknown protein
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10041098 pacid=23179823 polypeptide=Lus10041098 locus=Lus10041098.g ID=Lus10041098.BGIv1.0 annot-version=v1.0
ATGAAATTAGCTCCACAGACTGTTCTCCTGTTCAAGGACAAAGATGGCTTCGCTTCAGCAATGGCCAAGGCTCTCGATGCTAATCCTAGCTCCGGTTTGA
ATAAGCTGTATGTCCGTCCGTCCGTCAATGTCAACTTTCTCTCTATCCCTCGTTTTATTCTTTTTCTTTCTCCTGCTCACTTTACCTTATCCTCCGACAG
AGAAGATTCATTCGAGCTGCCGCTGGACAGCTACGGGGTAAAGGACTGGAAAGCTTCCGGCAATTTAGTTCATTTCGTCGACGATCAAGGGAATTTCCAG
GTTTCCTTGCTTCTTCTGGAAAAGTACGAGCCACCAATGTTAGCTTGCGCCATGAATGAAATTCTAGCTCACATAGTTAGAGGAGCATCATCATCAGAAT
CATCAACCTTACCCACGTTCATCGTTCCGTTCACCGAAGCATCAAAGTTAAAGTGGGAGACGAAAACCCCTCCGACAAATAAAGGTCAGGCAAAGCTCTA
CAGCATCCAGTTTGGGCCGGAAACTGATATAACTCAGGCGATCGCCAGCAAGACACAAAGGCCGCCGTCCTCTTTCCATGTCCATTACGAACCTCTGGCC
TGCTTTCTTCAGTTGGCTCGTGTACTGAAGCTGTCGACTTGTGTTGTCTTCGGACTAGGAGGGCATCAAGATTCTTCCGCGGATGAGATTGAGGCACTTC
AACAGACGGGGGAGTTTCTGGGGAAGATCACAGGGTTATGCTTCTTGAAGGAAAACGCGGCGTGGAACCCGAGGAAAGAGTCGAAGGAGATCAAGGAGCC
GTGGCGTGCACTCTATGGTTGA
AA sequence
>Lus10041098 pacid=23179823 polypeptide=Lus10041098 locus=Lus10041098.g ID=Lus10041098.BGIv1.0 annot-version=v1.0
MKLAPQTVLLFKDKDGFASAMAKALDANPSSGLNKLYVRPSVNVNFLSIPRFILFLSPAHFTLSSDREDSFELPLDSYGVKDWKASGNLVHFVDDQGNFQ
VSLLLLEKYEPPMLACAMNEILAHIVRGASSSESSTLPTFIVPFTEASKLKWETKTPPTNKGQAKLYSIQFGPETDITQAIASKTQRPPSSFHVHYEPLA
CFLQLARVLKLSTCVVFGLGGHQDSSADEIEALQQTGEFLGKITGLCFLKENAAWNPRKESKEIKEPWRALYG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07640 unknown protein Lus10041098
[exp]
0 1
AT5G20180 Ribosomal protein L36 (.1.2) Lus10019412
[exp]
1.4 0.8224
AT2G35605 SWIB/MDM2 domain superfamily p... Lus10033312
[exp]
4.7 0.7628
AT5G01075 Glycosyl hydrolase family 35 p... Lus10018699
[exp]
6.3 0.7789
AT5G46920 Intron maturase, type II famil... Lus10003019
[exp]
8.4 0.7696
AT4G13520 SMAP1 small acidic protein 1 (.1) Lus10023702
[exp]
10.6 0.7685
AT3G09860 unknown protein Lus10001400
[exp]
10.6 0.8009
AT2G27970 CKS2 CDK-subunit 2 (.1) Lus10041349
[exp]
11.5 0.7885
AT3G59650 mitochondrial ribosomal protei... Lus10006114
[exp]
14.3 0.7770
AT3G12390 Nascent polypeptide-associated... Lus10026133
[exp]
14.7 0.7670
AT5G27650 Tudor/PWWP/MBT superfamily pro... Lus10043114
[exp]
15.1 0.7849

Lus10041098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.