Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31340 363 / 1e-122 myosin heavy chain-related (.1.2) AT2G24420 335 / 1e-111 DNA repair ATPase-related (.1.2) AT4G30090 115 / 2e-28 EMB1353 embryo defective 1353 (.1) AT1G28410 46 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036424 [exp] 640 / 0 AT4G31340 409 / 3e-141 myosin heavy chain-related (.1.2) Lus10020166 [exp] 490 / 2e-172 AT4G31340 451 / 8e-157 myosin heavy chain-related (.1.2) Lus10026967 [exp] 486 / 1e-170 AT4G31340 449 / 3e-156 myosin heavy chain-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G003700 [exp] 427 / 1e-147 AT2G24420 462 / 5e-161 DNA repair ATPase-related (.1.2) Potri.006G276900 [exp] 426 / 2e-147 AT2G24420 474 / 9e-166 DNA repair ATPase-related (.1.2) Potri.006G076700 [exp] 129 / 1e-33 AT4G31340 157 / 5e-44 myosin heavy chain-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041099 pacid=23179908 polypeptide=Lus10041099 locus=Lus10041099.g ID=Lus10041099.BGIv1.0 annot-version=v1.0 ATGGCGGCCGCTAAGTTTCTCGTCTTGTCGCTCTTCCTCGCCCTAGCATTTTCTGCTGCTTGGGTGGACGCTTCGGTTGATAGCGATGGCGGCGATCAGC CGCCAGCCAGTAAAGTCGCTGGATCTAAGGACCTCGACCCCTCCGCTCAGAATATCGAACTGCACCAACTGACGTCCAAGATCCAAGAGCTTGAGTCGCA GATTGATAAGAAAACATCGGAATTGAAGGCAAAAGACGACAAATTAGCTGAGAAAGAGAAATCCATAAACGAGAAGGCTGATAGCATTAGATCGTTGCAT AGCGAAGTTTCATCCCTTCAGGGAAAGTTGGATTGTAGTAACGAGGCGAACAAGGCCAATGCAGTGACTGTTGAATTGGAGAAGCAGCTTGATAAACTTA AAGAAAATTTTGAGGCGCAAAATGCAGAAAAAGAGGCACTCCAAGCTAAGGCTATTGAAGCTGATTTGAAGGTTGACGAAGTGAACTCAAAACTGAAGGA TCTTCAGAAGATCAGCAATGAGCAAAAGAGCAAAATCATGAAAACCGAGCGCGCTCTTAAAGTTGCTGAGGAAGAAATGATGACGGCAAAGCTGGAGGCT AGCTCGAAAACAAAGGAGTTACTCGAGGTTCATGCTGCTTGGCTCCCTCCATGGCTTGCAGTCCAATTATTTCGCTTTCAGGCTTTGGTCAATAAACACT GGAATGATCACGGCCAGCCAACAGTGGAATTAGTTTATCGAAAGACCCTGGAGAAGAAGGCAAAGGCTGCTAAGTGGGCTGAACCACATCTGGAGACAGT AAAAACTAAATGGATTCCAACGGTGAAGGATAAGTTAGTGGCTGTAACTACTCAGGTTGAACCACATATGCGGTCACTAACTGCAAAATCAGTGGAATTT TATGAGACCTCAAAGGCCGCAATAGAAGTTCACCTAATCAGAGTACAAGAGATCGTCGATCCATACTTTCAGGAAGCTAAGAAATTCAGTAAGCCATATA TTGATCAGATCGCCGCAGTTGCTGAACCTCATGTTAACAGAATAAAGGTGGTCGTGAAACCATACACAAAGAAAGTAGCTCGTGCTTACGGGAGCTTCCT AGAGTCAGCAACTACATATCATAATCAGGTGCAAGGAACTGTTCAAGATACCCTGGAAAGGCACGAGTTGACGAAACCACTTGCAACTAAAGAGTTTGTC TGGTTTGTGCAAGAAACCAAGGAGACCAAGTCGAAGCTCCGGCCATTCGCGACGGAAGGGTAA
AA sequence Show only first row Show all	>Lus10041099 pacid=23179908 polypeptide=Lus10041099 locus=Lus10041099.g ID=Lus10041099.BGIv1.0 annot-version=v1.0 MAAAKFLVLSLFLALAFSAAWVDASVDSDGGDQPPASKVAGSKDLDPSAQNIELHQLTSKIQELESQIDKKTSELKAKDDKLAEKEKSINEKADSIRSLH SEVSSLQGKLDCSNEANKANAVTVELEKQLDKLKENFEAQNAEKEALQAKAIEADLKVDEVNSKLKDLQKISNEQKSKIMKTERALKVAEEEMMTAKLEA SSKTKELLEVHAAWLPPWLAVQLFRFQALVNKHWNDHGQPTVELVYRKTLEKKAKAAKWAEPHLETVKTKWIPTVKDKLVAVTTQVEPHMRSLTAKSVEF YETSKAAIEVHLIRVQEIVDPYFQEAKKFSKPYIDQIAAVAEPHVNRIKVVVKPYTKKVARAYGSFLESATTYHNQVQGTVQDTLERHELTKPLATKEFV WFVQETKETKSKLRPFATEG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31340			myosin heavy chain-related (.1...		Lus10041099 [exp]	0	1
AT1G80960			F-box and Leucine Rich Repeat ...		Lus10005646 [exp]	6.5	0.6263
AT3G62220			Protein kinase superfamily pro...		Lus10010072 [exp]	34.2	0.6140
AT5G04920			EAP30/Vps36 family protein (.1...		Lus10008942 [exp]	86.7	0.5416
AT4G36210			Protein of unknown function (D...		Lus10041814 [exp]	102.4	0.5400
AT5G03330			Cysteine proteinases superfami...		Lus10001404 [exp]	105.3	0.5396
AT4G37590		MEL1, NPY5	NAKED PINS IN YUC MUTANTS 5, M...		Lus10011525 [exp]	129.7	0.5333

Compare expression of checked genes

Lus10041099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.