Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71820 1138 / 0 SEC6 SEC6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026982 [exp] 1188 / 0 AT1G71820 1331 / 0.0 SEC6 (.1.2) Lus10020177 [exp] 1149 / 0 AT1G71820 1257 / 0.0 SEC6 (.1.2) Lus10036425 [exp] 134 / 4e-36 AT1G71820 123 / 5e-33 SEC6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G117400 [exp] 1157 / 0 AT1G71820 1345 / 0.0 SEC6 (.1.2) Potri.019G088100 [exp] 1144 / 0 AT1G71820 1346 / 0.0 SEC6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF06046 [flax] [poplar] Sec6 Exocyst complex component Sec6
Representative CDS sequence Show only first row Show all	>Lus10041100 pacid=23179543 polypeptide=Lus10041100 locus=Lus10041100.g ID=Lus10041100.BGIv1.0 annot-version=v1.0 ATGGGGGAGGATCTTGAGGTGGAAGCGAAGGAGGCGGCGGTGAGAGAGGTGGCCAAATTGTTACCTCTTCCAGAACTCTTACAATCCATTGCCTCTATCA AAGCTGATTACATCTCACGCCAGCAGGCAAATGATGCCCAACTAAGTACAATGGTTGCAGAGCAGGTTGAGCAAGCACAATCTGGGCTGTCCTCACTGTC TTCATCTCAGGCCACAATAAGCCAGCTTCGTGACAACTTCGTTGGGATTGAAAAGCTTTGTCAAGAGTGCCAAACCTTAATTGACAACCACGACCAGATC AAGCTCCTTAGCAATGCAAGGAATAACCTAAACACGACTTTAAAGGATGTGGAGGGCATGATGTCAATATCAACTGAAGCAACAACGGCAAGAGACTCGT TAAGTGATGATAGAGAGCTTGTCAACACGTACGAGAGGTTAACCGCTCTTGATGGGAAGCGAAGGTTCGCATTAGCAGCAGTTGAATCTCATACTGACGA GGTTGGTAAACTAAGAGAATATTTTGAAGATGTGGATCGAAGTTGGGAGACATTTGAGAAGACATTATGGGTCCATGTAGCAAACTTTTATAAGCTTGCA AAAGAAAGCCCACAAACCTTGGTTCGTGCTTTGAGGGTAGTCGAAATGCAAGAGATTTTGGACCAACAAATTGCGGAGGAAGCCGAGGCAGCTGAGGTTG ACGAAGTAGTTGATTCTATTTCGACAACAACTGCTAATCCTCGCCGATCTAACAAGAAATCCAAGGTTGGGGGAAAACGTTATAAGGACAAATGTTACGA GGCAATAAGAAAAGCAGCAGAAGCACGATTCAACAAGCTGTTGACTGAGTTAGTCTTCCAAGATCTCAAAGCCGCATTAGAAGAAGCTCGAATGATTGGA GAAGAGCTAGGTGATATTTATGACTTCGTGGCTCCATGTTTCCCTCCAAGATATGAAATATTCCAGCTTATGGTGAATATGTTTACTGAAAGATTCATTC AGATGCTCCGATTGCTCAGTGATCGAGCTGGTGAGCTCACAAATATTGAAATTTTAAAGGTGACAGGGTGGGTGATTGAGTTCCAAGACAATCTGATTGG ACTTGGTGTGGATGAAACACTGGCACAAGTTTGCTCAGAGAGTGGTTCAATGGATCCCCTCATGAACTCCTATGTTGAGAGAATGCAGGCCACAACTAAG AAATGGTACCTAAACATACTGGAAGCTGACAAAGTACAGCCACCAAAGAAAACAGAGGATGGGAAGCTGTACACTCCAGCTGCTGTTGACCTCTTCAGGA TTCTTGGGGAGCAAGTTCAGATTGTTAGAGACAACAGTACTGATGCCATGCTCTACAGGATTTCATTGGCTATCATCCAGGTGATGATAGACTTCCAAGC AGCAGAGAAGAAAAGGCTGCAAGAACCAGCTTCTGAAATCGGTTTGGAACCTCTGTGTGCAATGATAAACAACAATCTACGTTGCTATGACCTTGCTATG GAGCTTAGTACTAGTATCATTGAAGCTCTTCCACAGAACTACGCAGAGCAGGTTGATTTTGAAGACACTTGTAAAGAATGGGCTGAAGGACAAGTTACTG AATATTTAGTTGCCACATTTGGTGATTACTTTACCGATGTCAAAATGTACATAGAGGAGAGATCCTTTAGAAGATTTGTGGAGGCTTGTGTGGAGGAAAC CGTGGTTGTTTATGTTGATCATCTTATTGCACAGAAAAACCACATAAAGGAAGAGACAATCGAGAGGATGACACTCGACGAGGAGGTGATCATGGACTTC TTCCGCGAGTACATCTCTGTCTCTAAAGTGGAACATAGAGTAAGGATAATGAGTGAATTGAGAGAACTCGCTTCAGCAGAGAGTTTGGATACATTTACAC TCGTGTATACAAATATTCTGGAACATCAACCAGACTGTCCGCCAGAGGTAGTCGAGAAGATCGTGGCATTGCGGGAGGGTATCCCTCGGAAGGATGCCAA AGAGGTGGTACAAGAATGCAAAGAGATATACGAGAATTCGCTCGTGGATGGTCACCCTCCGAAGACAGGGTTTGTGTTCCCGAGGCTGAAATCCTTAGCT GTGTCCAAAGGAGGAGGATACATCTGGAGAAAGCTCACTTAA
AA sequence Show only first row Show all	>Lus10041100 pacid=23179543 polypeptide=Lus10041100 locus=Lus10041100.g ID=Lus10041100.BGIv1.0 annot-version=v1.0 MGEDLEVEAKEAAVREVAKLLPLPELLQSIASIKADYISRQQANDAQLSTMVAEQVEQAQSGLSSLSSSQATISQLRDNFVGIEKLCQECQTLIDNHDQI KLLSNARNNLNTTLKDVEGMMSISTEATTARDSLSDDRELVNTYERLTALDGKRRFALAAVESHTDEVGKLREYFEDVDRSWETFEKTLWVHVANFYKLA KESPQTLVRALRVVEMQEILDQQIAEEAEAAEVDEVVDSISTTTANPRRSNKKSKVGGKRYKDKCYEAIRKAAEARFNKLLTELVFQDLKAALEEARMIG EELGDIYDFVAPCFPPRYEIFQLMVNMFTERFIQMLRLLSDRAGELTNIEILKVTGWVIEFQDNLIGLGVDETLAQVCSESGSMDPLMNSYVERMQATTK KWYLNILEADKVQPPKKTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDAMLYRISLAIIQVMIDFQAAEKKRLQEPASEIGLEPLCAMINNNLRCYDLAM ELSTSIIEALPQNYAEQVDFEDTCKEWAEGQVTEYLVATFGDYFTDVKMYIEERSFRRFVEACVEETVVVYVDHLIAQKNHIKEETIERMTLDEEVIMDF FREYISVSKVEHRVRIMSELRELASAESLDTFTLVYTNILEHQPDCPPEVVEKIVALREGIPRKDAKEVVQECKEIYENSLVDGHPPKTGFVFPRLKSLA VSKGGGYIWRKLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71820		SEC6	SEC6 (.1.2)		Lus10041100 [exp]	0	1

Compare expression of checked genes

Lus10041100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.