Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67200 721 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G50230 633 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G43020 591 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G10850 428 / 8e-142 Leucine-rich repeat protein kinase family protein (.1) AT1G60630 276 / 2e-83 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 276 / 2e-83 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 276 / 2e-83 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT5G24100 261 / 2e-78 Leucine-rich repeat protein kinase family protein (.1) AT1G25320 246 / 6e-72 Leucine-rich repeat protein kinase family protein (.1) AT5G35390 243 / 6e-71 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036426 [exp] 1139 / 0 AT5G67200 765 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10024803 [exp] 603 / 0 AT5G43020 678 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10018733 [exp] 603 / 0 AT5G43020 687 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035012 [exp] 305 / 2e-94 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021131 [exp] 298 / 4e-91 AT2G36570 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017178 [exp] 295 / 3e-90 AT2G36570 872 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021383 [exp] 288 / 5e-88 AT3G08680 667 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029075 [exp] 278 / 9e-84 AT1G10850 825 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013073 [exp] 276 / 2e-83 AT1G10850 820 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G046900 [exp] 813 / 0 AT5G43020 575 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G141200 [exp] 776 / 0 AT5G67200 734 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G024400 [exp] 644 / 0 AT5G43020 628 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G097200 [exp] 424 / 5e-140 AT1G10850 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 310 / 1e-96 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G068800 [exp] 285 / 6e-87 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.008G144900 [exp] 268 / 2e-80 AT1G10850 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 268 / 1e-79 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.017G154700 [exp] 255 / 7e-76 AT1G48480 309 / 2e-96 receptor-like kinase 1 (.1) Potri.008G176900 [exp] 243 / 1e-70 AT1G67510 923 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10041101 pacid=23179666 polypeptide=Lus10041101 locus=Lus10041101.g ID=Lus10041101.BGIv1.0 annot-version=v1.0 ATGCTCTTAACCGATTTCTCCTCCGGCTCCTCCTCCTCCATTTTCCTATTCATCCTCCTCATCCTCTTCTTTCCTTCCCCATCCAGCACTGCCGCCCCCC AACCCGACGCCGTATCCCTCCTATCCTTCAAATCCAAGGCCGACTTGGATAACAAGCTCCTCTACTCCCTCACCGAGCGCTTCGATTATTGTCAATGGCA TGGGGTCAAGTGTGCTCAAGGCCGCGTCGTCCGTGTCCTCCTCCAAGGCTTTGGCCTCCGTGGTGGTTTCCCTCCGGACACACTCACTCGTCTCGACCAG CTCCGAGTCCTTAGCCTCCGGGACAACTACCTCTCCGGCCCTATCCCTGACCTGTCTCCTCTCGTCAATTTGAAGTCTCTCTTTCTCAATGGAAATTCCT TCTCTGGAACTTTCCCTCCTTCCATTTTGTTCCTCCACCGCCTAACCCTACTTGATCTTTCACACAATGCCCTCACTGGCCCAGTCCCGGCGGGGCTCTC CGGTTTGGACAGGCTGAATTCGCTCCGGCTCGAGTGGAATAGCTTCTCCGGACTCATCCCGCCACTTAACCAGTCGTTTCTCGTCAGCTTCAACATCTCC CGGAACAATCTCACGGGACGAATACCCTTCACCCCGACGCTTTCGCGGTTCGACACCACTGCGTTTCTGCTGAATCCGGATCTCTGCGGCGAGATTATCA ACAAGGACTGCACATCCGTGAAGCCTCCCTTCTTCGAGCCATCCTCCTCCGCTCCGATTAATACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCGCT CAGTCAGAGTGCGGAGGCGCAAACTGGAGCGGCGTTTTCCTCTCCGCCGAGGAAACACCGGAGAGTCACTGCCATTCTTGCGTTCACGGTCGTCGTATCC TTGCTAGCTTTTTCCGGCATGTGTCTTTTCTTGGTTCAATCTAAGAGGAGCAGGAAGGTCGACCAAAGAGGAGCAGCGAAACCCCCACCACCGGAGGTCC CAGAGGCAGCTCAACCAATGTCAGTAATGGGGAAATCGCAGGGGTTTGAAGTTGCGGAGAGGAGTGGGAATTTGGTATACTGCGGAGGAGGAGGAGGAGG GAGGGAAAAACAAGGGTATAATCTGGAGCAGCTGATGAAAGCTTCGGCGGAGCTGCTGGGGAGAGGAAGCGTGGGAACAACGTACAAGGCAGTGCTGGAT AACGGGGTGATAATGACGGTGAAGAGGCTTGACGCTGGGAAGACGGCCATCACAGGGAGCCAAGCTTTCGAGAAACATATGGAGGGGGTGGGTGGGCTTA GGCACCCCAATTTGGTTAGAGTTAGGGCATATTTCCAGGCTAAGGGAGAGCGGCTGGTGATCTTTGATTATCAACCCAATGGAAGCCTCTTCAGTCTCAT TCATGGTTCAAGATCAACAAGAGCAAAGCCTCTTCACTGGACTTCCTGCTTAAAGATAGCTGAAGATGTGGGTCAAGGACTAGCGTACATACACCAAGCT TCACACCTGGTGCACGGCAACTTGAAGTCATCGAATGTCCTTCTGGGCCCTGATTTCGAGGCCTGCATTACGGACTACTGTCTGGCCGCACTTGCAGATA CATCATATAGTAGTACAAGTGACGATCCGAATTCAGCAGCATGTAAAGCTCCAGAGACACGCAAGTCGAACAGGGGTGCTACCCCCAAATCTGATGTGTA TGCATTTGGGGTGTTGTTATTGGAGCTGTTGACTGGGAAACACCCATCGCAGCACCCTTACCTTATGCCTGCTGATCTGCTTGATTGGGTTAGGGCAACG AGGGAGGAATACGATGGGCGGGAAGATAACCAGCTGGGAATGCTGACCGAAGTAGCGAGTGTGTGTAGCTTGACATCCCCGGAGCAGAGGCCTGCAATGT GGCAAGTGGTGAAGATGATACAGGAGATCAAAGACACTGTTGTGGTAGAGGATAGTGTCAGTATTGGATATGTATAG
AA sequence Show only first row Show all	>Lus10041101 pacid=23179666 polypeptide=Lus10041101 locus=Lus10041101.g ID=Lus10041101.BGIv1.0 annot-version=v1.0 MLLTDFSSGSSSSIFLFILLILFFPSPSSTAAPQPDAVSLLSFKSKADLDNKLLYSLTERFDYCQWHGVKCAQGRVVRVLLQGFGLRGGFPPDTLTRLDQ LRVLSLRDNYLSGPIPDLSPLVNLKSLFLNGNSFSGTFPPSILFLHRLTLLDLSHNALTGPVPAGLSGLDRLNSLRLEWNSFSGLIPPLNQSFLVSFNIS RNNLTGRIPFTPTLSRFDTTAFLLNPDLCGEIINKDCTSVKPPFFEPSSSAPINTSSSSSSSSSSPLSQSAEAQTGAAFSSPPRKHRRVTAILAFTVVVS LLAFSGMCLFLVQSKRSRKVDQRGAAKPPPPEVPEAAQPMSVMGKSQGFEVAERSGNLVYCGGGGGGREKQGYNLEQLMKASAELLGRGSVGTTYKAVLD NGVIMTVKRLDAGKTAITGSQAFEKHMEGVGGLRHPNLVRVRAYFQAKGERLVIFDYQPNGSLFSLIHGSRSTRAKPLHWTSCLKIAEDVGQGLAYIHQA SHLVHGNLKSSNVLLGPDFEACITDYCLAALADTSYSSTSDDPNSAACKAPETRKSNRGATPKSDVYAFGVLLLELLTGKHPSQHPYLMPADLLDWVRAT REEYDGREDNQLGMLTEVASVCSLTSPEQRPAMWQVVKMIQEIKDTVVVEDSVSIGYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	0	1
AT5G67200			Leucine-rich repeat protein ki...		Lus10036426 [exp]	1.0	0.9633
AT5G43020			Leucine-rich repeat protein ki...		Lus10018733 [exp]	2.0	0.9334
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10042643 [exp]	2.2	0.9326
AT1G68400			leucine-rich repeat transmembr...		Lus10031965 [exp]	3.7	0.9361
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10034690 [exp]	4.2	0.9268
AT5G03970			F-box associated ubiquitinatio...		Lus10022006 [exp]	4.6	0.9262
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	4.6	0.9019
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10016676 [exp]	5.7	0.9193
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Lus10007101 [exp]	6.6	0.8861
AT2G25270			unknown protein		Lus10001945 [exp]	6.9	0.9253

Compare expression of checked genes

Lus10041101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.