Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78070 612 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT1G36070 573 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G56190 507 / 7e-179 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G13340 505 / 5e-178 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G55680 502 / 8e-177 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 67 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G49660 65 / 3e-11 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 64 / 9e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 58 / 9e-09 MAC3B MOS4-associated complex 3B (.1.2.3) AT1G11160 58 / 1e-08 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036428 [exp] 840 / 0 AT1G78070 598 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10037252 [exp] 509 / 1e-179 AT1G55680 685 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10035667 [exp] 508 / 3e-179 AT1G55680 684 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021975 [exp] 491 / 2e-172 AT5G56190 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041268 [exp] 483 / 2e-169 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041007 [exp] 65 / 6e-11 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 65 / 1e-10 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10004167 [exp] 64 / 1e-10 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 62 / 4e-10 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G168600 [exp] 674 / 0 AT1G78070 649 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G094100 [exp] 672 / 0 AT1G78070 655 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G000500 [exp] 528 / 0 AT3G13340 683 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G168600 [exp] 521 / 0 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G471800 [exp] 500 / 4e-176 AT3G13340 736 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G147400 [exp] 491 / 2e-172 AT3G13340 605 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G233700 [exp] 489 / 1e-171 AT3G13340 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.016G000800 [exp] 167 / 2e-50 AT5G56190 201 / 8e-64 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G147500 [exp] 109 / 2e-28 AT3G13340 124 / 2e-34 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G255400 [exp] 67 / 1e-11 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10041102 pacid=23179868 polypeptide=Lus10041102 locus=Lus10041102.g ID=Lus10041102.BGIv1.0 annot-version=v1.0 ATGGCTGAATTCCATAATAATGACCTGGAGTACGTTGATGATGACTACTATGGCTCCGATTTCGAAGAGGAGCCGCAGGTTCAAAAGTGTGACGAGTTGG AGTCTCTGGACTCGGACTTTGAAGACGATTTTGAGTTTAGCAAGTCGAAGACGGATACAACTGCTGTAGAGTTTAGGCGTGGGAAGGATATTCAAGGGAT TCCATGGGAGAGGCTGAATTACACTAGGGACAAGTACCGGGAGACTAGATTAAAGCAGTACAAGAACTACGAGAACCTGTCTCCTTCTCATGAAGAGATC AATAAGGAATGTTTGCAAGTGGACAAGGACAAGACATTTTATGACTTCCAGTTGAATACGAGGCTCGTCAAATCGACAATTGTGCATTTTCAGCTGAGGA ATCTTCTGTGGGCAACATCGAAGCATGATGTCTTCCTTGTGGGCGACTATTCTGTAATGCATTGGTCTGCTTTGGCAAGAAAAGGAAAGGAAGTCCTCAA TGTTGCCAAACCGGTAGTTCCTACCTTGAAACGGCCAGGATTGCTGACTCAGTCCCTTTCGCGGGTGCAAATCAGTTCCATGGCCGTGAAAGATAACATA TTAGTCGCAGGTGGATTTCAAGGGGAGCTCATTTGCAAGTATCTGGATCATCCTGGAGCTGCATTCTGCACGAAACTGACAACGCATGAAAATGCAATTA CCAATGCGGTTGATATCTATTGCAGCCCCAGCGGCTCAGAGAGGATAATGGCAGCAAATAACGATGCACAGATCCGCGTTATCGACACCGAGAGTTTTAC ATGCCTAAACCAGTTCTCTTTCGATTGGTCCATAAATAGCACGTCGGTTAGCCCAGACGGAAAGCTGGTAGCAGTCCTCGGGGACAGTGTCGATTGCCTG ATGCTGGACGCCCAGTCTGGGAAGGTAACTACTAACCTCAAAGGCCATGTGGACTATTCATTCTCATCGGCATGGCATCCAGACGGGAGAATATTAGCTA CCGGCAACCAAGACACCACATGCAGGATATGGGACATCCGAAACCCGTCCAGGTCCCTCGCTGTTCTCAAGGGAAACATGGGTGCTATCAGAGGCCTCAA GTTCACGTCGGATGGTTCGTTCTTGGGTATGCAAGAGCCCGCAGACTTTGTCCACGTGTTCGATGTTGAATCCGGGTACGTCAAGTGCCAGGAGATCGAC CTGTTTGGGGAGATCGCTGGAATCTCCTTCAGCCCCGATTCGGAGTCTTTGTTTGTTGGCATAGCCGATCGTACTTATGGGAGTCTGTTGGAGTTCGGCA GGAGGCGTTGCGTTACTCACTTGGACTCGTTCTTTTATTAG
AA sequence Show only first row Show all	>Lus10041102 pacid=23179868 polypeptide=Lus10041102 locus=Lus10041102.g ID=Lus10041102.BGIv1.0 annot-version=v1.0 MAEFHNNDLEYVDDDYYGSDFEEEPQVQKCDELESLDSDFEDDFEFSKSKTDTTAVEFRRGKDIQGIPWERLNYTRDKYRETRLKQYKNYENLSPSHEEI NKECLQVDKDKTFYDFQLNTRLVKSTIVHFQLRNLLWATSKHDVFLVGDYSVMHWSALARKGKEVLNVAKPVVPTLKRPGLLTQSLSRVQISSMAVKDNI LVAGGFQGELICKYLDHPGAAFCTKLTTHENAITNAVDIYCSPSGSERIMAANNDAQIRVIDTESFTCLNQFSFDWSINSTSVSPDGKLVAVLGDSVDCL MLDAQSGKVTTNLKGHVDYSFSSAWHPDGRILATGNQDTTCRIWDIRNPSRSLAVLKGNMGAIRGLKFTSDGSFLGMQEPADFVHVFDVESGYVKCQEID LFGEIAGISFSPDSESLFVGIADRTYGSLLEFGRRRCVTHLDSFFY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78070			Transducin/WD40 repeat-like su...		Lus10041102 [exp]	0	1
AT5G47860			Protein of unknown function (D...		Lus10008591 [exp]	1.4	0.9473
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10035893 [exp]	2.4	0.9199
AT4G03020			transducin family protein / WD...		Lus10042682 [exp]	2.4	0.9392
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	2.6	0.9052
AT3G14205			Phosphoinositide phosphatase f...		Lus10013184 [exp]	3.9	0.9086
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10041759 [exp]	4.1	0.8859
AT4G04470		PMP22	Peroxisomal membrane 22 kDa (M...		Lus10020027 [exp]	5.7	0.9109
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10024138 [exp]	5.7	0.8905
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10020162 [exp]	6.5	0.9080
AT1G75380		ATBBD1	bifunctional nuclease in basal...		Lus10024277 [exp]	6.9	0.8979

Compare expression of checked genes

Lus10041102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.