Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02740 538 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G36260 534 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G05840 534 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G65240 523 / 0 Eukaryotic aspartyl protease family protein (.1) AT5G22850 338 / 3e-111 Eukaryotic aspartyl protease family protein (.1) AT2G36670 311 / 1e-100 Eukaryotic aspartyl protease family protein (.1.2) AT1G08210 310 / 1e-100 Eukaryotic aspartyl protease family protein (.1) AT5G43100 139 / 2e-35 Eukaryotic aspartyl protease family protein (.1) AT1G49050 132 / 3e-33 Eukaryotic aspartyl protease family protein (.1.2) AT4G33490 130 / 3e-33 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036430 [exp] 934 / 0 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 754 / 0 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 739 / 0 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 543 / 0 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 328 / 3e-107 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 325 / 9e-106 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 313 / 2e-101 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027732 [exp] 308 / 1e-99 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 306 / 4e-93 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054900 [exp] 678 / 0 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 562 / 0 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 330 / 3e-108 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 323 / 2e-105 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 317 / 7e-103 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G096700 [exp] 293 / 1e-93 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G020200 [exp] 138 / 6e-35 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 134 / 5e-34 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.015G053300 [exp] 134 / 1e-33 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.010G128200 [exp] 131 / 3e-33 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10041103 pacid=23180047 polypeptide=Lus10041103 locus=Lus10041103.g ID=Lus10041103.BGIv1.0 annot-version=v1.0 ATGGATCTGAGGAGGAGGCTCCTCCTGCCGTCGGCCTTGTTGCTGGTGTTCTCCTTCACTTCAGCCTCCGCCAACCTGGTTTTCCACGTTCATCACAAGT TCGCGGGCCGTGAGCGCCAGCTCAGTGCTTTCAGAGCTCATAATCCCCAACGCCACCGTCGATCCCTCGCTGCCGTCGACATCCCCCTCGGTGGAACTGG AGATCCTACCACTGTCGGCCTCTACTATACGAAAATTGGGCTTGGGACTCCTCGAAAAGACTATTATGTGCAGGTTGACACTGGAAGCGATACAATGTGG GTGAACTGTGTGGAATGTAACAAGTGTCCTACAAGAAGTGAACTCGGGGTAAAGCTGACGTTGTTTGATCCGAAAAGCTCTTCGTCTGCAACTAGGGTTT CTTGTGACGATGAGTTCTGCGTTTCAACATTCAGTCGCATGATGGATGGGTGTACAAACGCTTTGCCTTGCCAATACAGTATCACTTATGGTGATGGAAG TGAAACAGCGGGATTTTATGTCAGGGACAATGTACAACTTGATCAAGTGACTGGAAATCTTCAAACTGGAACCTTGAATGGGTCTATTGTATTTGGGTGC GCGGCACAACAATCTGGCCAGTTAGGTACACCCACTGAAGCACTTGACGGGATCGTTGGTTTTGGACAGGCAAATTCGTCCTTGTTTTCACAACTTGCTG CTTCTGGAAAGGTCAAGCGAGTGTTTTCACATTGCCTAGACAGTGTAAAGGGAGGTGGAATTTTTGCAATTGGTGAAGTGGTGGCTCCAAAAGTGCCCAC AACTCCCATGATACCCAACCAGGCCCATTACAACGTGGCTCTGAAGGATGTTGAAGTGGGAGGTGAAGTGCTAGATCTTCCTACCGACATCTTCGACACG GGAGATAGAAAAGGAACTATAATTGATAGTGGTACAACGTTGGCATACCTTCCAGAGCCGGTTTATGAATCAGTGATGAGAAAGATTCTTGCTAGGCAGC CTGGAACGAAGTTGCACACTGTTGAAGAGCAGTTCTCTTGCTTTGATTACAACGGAAAAGTTGACGACGACTTCCCTGTCGTGACGTTTCACTTTGAAGA TTCACTCAAGCTGGCAGTGCATCCTCATGACTATATTTTTCATTTTAAAGAAGACGAATGGTGCTTCGGTTGGCAGAATAGCGGGGCACAATCCAAAGAC AGTAGTGGCATGATTCTTCTAGGAGATCTTGTGCTCTCAAACAAGCTTGTTGTATACGATCTCGTGAACCAAGCCATTGGATGGACAGACTACAACTGCT CTTCAAGCATCAAAATAAAGGACGAGAAGACAGGAGCGGTTTATCAAGTGGGCGCGAAGGATATATCGGCAGGCCGGGAGCTGAACCCAGTAAGAAACCT GACATTCTTCTTGTTACTATTTGCAGTGTTGTATAGATTCTTATGA
AA sequence Show only first row Show all	>Lus10041103 pacid=23180047 polypeptide=Lus10041103 locus=Lus10041103.g ID=Lus10041103.BGIv1.0 annot-version=v1.0 MDLRRRLLLPSALLLVFSFTSASANLVFHVHHKFAGRERQLSAFRAHNPQRHRRSLAAVDIPLGGTGDPTTVGLYYTKIGLGTPRKDYYVQVDTGSDTMW VNCVECNKCPTRSELGVKLTLFDPKSSSSATRVSCDDEFCVSTFSRMMDGCTNALPCQYSITYGDGSETAGFYVRDNVQLDQVTGNLQTGTLNGSIVFGC AAQQSGQLGTPTEALDGIVGFGQANSSLFSQLAASGKVKRVFSHCLDSVKGGGIFAIGEVVAPKVPTTPMIPNQAHYNVALKDVEVGGEVLDLPTDIFDT GDRKGTIIDSGTTLAYLPEPVYESVMRKILARQPGTKLHTVEEQFSCFDYNGKVDDDFPVVTFHFEDSLKLAVHPHDYIFHFKEDEWCFGWQNSGAQSKD SSGMILLGDLVLSNKLVVYDLVNQAIGWTDYNCSSSIKIKDEKTGAVYQVGAKDISAGRELNPVRNLTFFLLLFAVLYRFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02740			Eukaryotic aspartyl protease f...		Lus10041103 [exp]	0	1
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	2.2	0.8477
AT2G38610			RNA-binding KH domain-containi...		Lus10019116 [exp]	4.0	0.8102
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011882 [exp]	4.2	0.8014
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10040387 [exp]	5.5	0.7933
AT3G16270			ENTH/VHS family protein (.1)		Lus10025811 [exp]	5.7	0.7999
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10013493 [exp]	6.3	0.8134
AT5G01460			LMBR1-like membrane protein (....		Lus10035505 [exp]	7.9	0.8129
AT1G15020		QSO2, ATQSOX1	quiescin-sulfhydryl oxidase 1 ...		Lus10035270 [exp]	8.1	0.7962
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10037049 [exp]	8.5	0.7986
AT1G22540			Major facilitator superfamily ...		Lus10009462 [exp]	11.6	0.7777

Compare expression of checked genes

Lus10041103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.