Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47390 769 / 0 PHS1 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) AT4G20960 87 / 5e-18 Cytidine/deoxycytidylate deaminase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036431 [exp] 1042 / 0 AT3G47390 870 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10026832 [exp] 865 / 0 AT3G47390 876 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10020208 [exp] 862 / 0 AT3G47390 885 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Lus10037850 [exp] 101 / 7e-23 AT4G20960 430 / 1e-149 Cytidine/deoxycytidylate deaminase family protein (.1) Lus10030388 [exp] 100 / 8e-23 AT4G20960 422 / 7e-147 Cytidine/deoxycytidylate deaminase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054000 [exp] 806 / 0 AT3G47390 935 / 0.0 PHOTOSENSITIVE 1, cytidine/deoxycytidylate deaminase family protein (.1.2) Potri.002G158800 [exp] 97 / 2e-21 AT4G20960 422 / 6e-146 Cytidine/deoxycytidylate deaminase family protein (.1) Potri.014G083000 [exp] 70 / 1e-13 AT4G20960 272 / 6e-91 Cytidine/deoxycytidylate deaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0387 [flax] [poplar] DHFred PF01872 [flax] [poplar] RibD_C RibD C-terminal domain CL0109 [flax] [poplar] CDA PF00383 [flax] [poplar] dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region CL0109 [flax] [poplar] PF08719 [flax] [poplar] NADAR NADAR domain
Representative CDS sequence Show only first row Show all	>Lus10041104 pacid=23179983 polypeptide=Lus10041104 locus=Lus10041104.g ID=Lus10041104.BGIv1.0 annot-version=v1.0 ATGATAGCCGCCGCCCGTGAAGAAAAATGTCGAAGTCCGATTCTGTATTTCTTTAGCACAACCGGAAATAAAGGGATGGGCTTTCTATCCGTCGCCGGAA ATCTCCTCCACGGAAAGGATGCAGCCTACATGAAACGAGCGGCGGAGCTTGCCGACAGCTCAGCTGGGTTCACTTCTCCCCATCCCAATTTCGGATGCGT CCTAATCACTCCCTCCGGAAACCTCGCCGGAGAAGGCTATCTCTACGCCCAAGGCACCAAGCCGGCCGAAGTTCAGGCAGTCGAGTCCGCCGGCCATTTG AGCAAAGGCGCAACCGCGTATTTGAATCTCGAGCCAGGGGATTGCCATGGAGATCCAGCTGCCGTCTCTGCTCTTGTCCAGGCTGGCGTTGCGCGAGTGG TGGTGGGCGTCAGGCATCCGTTGAAGCATCTCCAAGGTCGTGCTGTCCGTGCTCTGCGGAATGAAGGTTTGCAGGTTGATGTTCTTGGAGAGGATTTGGA GAGTAAGTTGATTGAGGAAGCTCGGAAATCCTGCCTTCTAGTCAATGCTCCTTTGATGTACAGAGCTGCTTCTAGGGTGCCATTTTCGTTTCTCAAGTAT GCCATCACCCTTGATGGAAAAATTGCCGCAAGTACTGGACATGCAGCATGGATTAGCAGCAGGAAATCGAGGAATCGAGTTTTCGAGCTTCGTGGTAGAA GTGATGCTGTTATTGTTGGAGGGAACACTGTACGTAGAGACAATCCGCGATTGACTGCTCGACATGGTGGAGATCATATGCCGTTACGGGTTGTAATGAG TCAATCTCTTGATCTGCCAGAGGAAGCGAATCTTTGGGATGTCTCTCAGGTGCAAACTATAGTTGTGACTCAGAGGGGTGCAAGAAGGAATTTCCAGAAG CTACTAGCATCGAAAGGAGTCGAAGTCGTCGAGTTCGACATCCTCAGCCCGAGAGAAACCATGGAGTATTTCCATGGCCGTGGGTATCTTTCCGTTATGT GGGAGTGTGGTGGAACCCTTGCTGCTTCTGCTATTTCAGCTGGCGTGATACACAAGGTTTATGCATTTGTTGCCCCAAAGATAATCGGAGGGAAGAATGC ACCAACCCCGGTTGGTGAACTCGGAATGGTCGAGATGTCTCAGGCTCTGGATCTAATCGATGTTAGCTATGAGCAGATCGGTCCAGACATGCTTATCGGA GGGTATCTGCAGCTAATACCGGACCCTACACCGGCTATCCCATCATCGGATGAAACATTGGCCATCGATCCCACTGTGAACCTGCACGAATCAAACATCA TATTTTTCTACAAAGCATGGGATCCTTACAGAGCCTTCTCGAATTTTTCTTATCATAAAATCGAGATGACGGAAGAGGATGGTGGTTTTGAAACATGGTC GAGCGTGGAGCATTATTACCAGGCCTGCAAGTTTACAGGAGTCGGTGATCCGGGAGCGAACGACTGCATCGAGAAGATCAAGTGCGCAAAGAGTCCAGAA CAAGCTGCGAAGTTCGGCCGGTCAATGCAAAGGCTGCATCCTAACATGGTGAGACCGGACTGGGAGAATGTGAAGATTGATGTCATGTACAGTGCGTTAA GGAGCAAGTTCTCGAGATATTGTCATTTGAAATCAATGCTGCTCGCGACGGCTGGGTAA
AA sequence Show only first row Show all	>Lus10041104 pacid=23179983 polypeptide=Lus10041104 locus=Lus10041104.g ID=Lus10041104.BGIv1.0 annot-version=v1.0 MIAAAREEKCRSPILYFFSTTGNKGMGFLSVAGNLLHGKDAAYMKRAAELADSSAGFTSPHPNFGCVLITPSGNLAGEGYLYAQGTKPAEVQAVESAGHL SKGATAYLNLEPGDCHGDPAAVSALVQAGVARVVVGVRHPLKHLQGRAVRALRNEGLQVDVLGEDLESKLIEEARKSCLLVNAPLMYRAASRVPFSFLKY AITLDGKIAASTGHAAWISSRKSRNRVFELRGRSDAVIVGGNTVRRDNPRLTARHGGDHMPLRVVMSQSLDLPEEANLWDVSQVQTIVVTQRGARRNFQK LLASKGVEVVEFDILSPRETMEYFHGRGYLSVMWECGGTLAASAISAGVIHKVYAFVAPKIIGGKNAPTPVGELGMVEMSQALDLIDVSYEQIGPDMLIG GYLQLIPDPTPAIPSSDETLAIDPTVNLHESNIIFFYKAWDPYRAFSNFSYHKIEMTEEDGGFETWSSVEHYYQACKFTGVGDPGANDCIEKIKCAKSPE QAAKFGRSMQRLHPNMVRPDWENVKIDVMYSALRSKFSRYCHLKSMLLATAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10041104 [exp]	0	1
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043196 [exp]	10.2	0.7309
AT4G04614			unknown protein		Lus10006902 [exp]	10.9	0.7297
					Lus10038131 [exp]	13.2	0.7150
AT2G22360			DNAJ heat shock family protein...		Lus10025742 [exp]	20.5	0.7183
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Lus10031030 [exp]	22.2	0.6991
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	27.0	0.7130
AT2G31230	AP2_ERF	ATERF15	ethylene-responsive element bi...		Lus10022935 [exp]	27.4	0.6299
AT4G10000			Thioredoxin family protein (.1...		Lus10001283 [exp]	33.8	0.7153
AT1G27060			Regulator of chromosome conden...		Lus10036707 [exp]	34.9	0.6489
AT1G03560			Pentatricopeptide repeat (PPR-...		Lus10039799 [exp]	36.7	0.6816

Compare expression of checked genes

Lus10041104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.