Plant FIBer expression Database

Lus10041105 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16470 153 / 7e-50 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
AT3G02790 153 / 1e-49 C2H2ZnF zinc finger (C2H2 type) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036432
[exp]
214 / 9e-74 AT3G02790 150 / 9e-49 zinc finger (C2H2 type) family protein (.1)
Lus10026839
[exp]
167 / 1e-54 AT3G02790 146 / 1e-46 zinc finger (C2H2 type) family protein (.1)
Lus10020216
[exp]
166 / 2e-54 AT3G02790 146 / 1e-46 zinc finger (C2H2 type) family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G053500
[exp]
165 / 2e-54 AT3G02790 160 / 2e-52 zinc finger (C2H2 type) family protein (.1)
Potri.013G086400
[exp]
157 / 2e-51 AT3G02790 162 / 1e-53 zinc finger (C2H2 type) family protein (.1)
PFAM info
Representative CDS sequence
>Lus10041105 pacid=23179620 polypeptide=Lus10041105 locus=Lus10041105.g ID=Lus10041105.BGIv1.0 annot-version=v1.0
ATGACTGGAAAAGCGAAGCCGAAGAAGCACACTGCCAAGGAGCTGGCCGCGAAGCTCGACGCTGCTACCACGAACAGGGGCGGAGGCAAAGCCGGAATAG
TAGATAGGACAGGCGGAGAAAAAGGTGGCCATTCCAAATTCGAGTGTCCGCTCTGTAAGGTGACTGCTCCTGACATCAAATCGATGCAGATCCATCACGA
TGCTCGCCATCCTAAGCTTCCCTTCGACGAAGCCAAGTGTTCCAATCTACACGCTACTCTGGTCGCGGCGGCACCTGCCGAAACCTCCTCCTCCTCCGGT
AAGCCGCGTCCTGGAGTCAGGGGCAGCCTCAAGAAGTGA
AA sequence
>Lus10041105 pacid=23179620 polypeptide=Lus10041105 locus=Lus10041105.g ID=Lus10041105.BGIv1.0 annot-version=v1.0
MTGKAKPKKHTAKELAAKLDAATTNRGGGKAGIVDRTGGEKGGHSKFECPLCKVTAPDIKSMQIHHDARHPKLPFDEAKCSNLHATLVAAAPAETSSSSG
KPRPGVRGSLKK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G02790 C2H2ZnF zinc finger (C2H2 type) family... Lus10041105
[exp]
0 1
AT2G33730 P-loop containing nucleoside t... Lus10015187
[exp]
3.2 0.9171
AT2G31670 Stress responsive alpha-beta b... Lus10034659
[exp]
6.2 0.8912
AT5G47030 ATPase, F1 complex, delta/epsi... Lus10001082
[exp]
8.4 0.9167
AT1G54140 TAF9, TAFII21 TBP-ASSOCIATED FACTOR 9, TATA ... Lus10012411
[exp]
10.2 0.8995
AT1G07360 C3HZnF MAC5A MOS4-associated complex subuni... Lus10037244
[exp]
10.6 0.8946
AT5G20570 HRT1, ROC1, RBX... REGULATOR OF CULLINS-1, RING-b... Lus10037680
[exp]
12.6 0.8990
AT1G20200 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2... Lus10034469
[exp]
13.3 0.9060
AT3G08910 DNAJ heat shock family protein... Lus10005033
[exp]
13.4 0.8690
AT5G08060 unknown protein Lus10017854
[exp]
16.5 0.8697
AT5G59950 RNA-binding (RRM/RBD/RNP motif... Lus10025329
[exp]
19.7 0.8771

Lus10041105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.