Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16490 52 / 1e-08 RIC4 ROP-interactive CRIB motif-containing protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036433 [exp] 302 / 5e-105 AT5G16490 64 / 1e-12 ROP-interactive CRIB motif-containing protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G086600 [exp] 61 / 1e-11 AT5G16490 109 / 7e-31 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.019G053300 [exp] 59 / 8e-11 AT5G16490 108 / 2e-30 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.002G233400 [exp] 59 / 1e-10 AT5G16490 89 / 1e-22 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.014G147000 [exp] 51 / 6e-08 AT5G16490 76 / 8e-18 ROP-interactive CRIB motif-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041106 pacid=23179565 polypeptide=Lus10041106 locus=Lus10041106.g ID=Lus10041106.BGIv1.0 annot-version=v1.0 ATGAGGGCAGGCAGAAGAATGGAGCGCCTGGTACTACTCCCATTCACCATCGGCTGCGTCTCTGAGTCCAGCATCGCCATTGCCAACCATCGCCACATCC ACCACCCCAGATCGAGATCGAGGCCATCTTCGTCGAATCCTCTTACCACCACCAAGAACAACAATTCCCCTCCACCGTCAACAATCGGAAGGAGGTTAGA AGACGACGATCATAGCCTATCCAGTAACGACGAAGACACCAAACTGCCCATCAGCAACATATCTGCCGGTTTCCATCGGTTTCTCAAGTCTTTCAAGTCT ACTTACGTGAACAATGCAGATGACGGGGAAGAAGAAATGGAAGAGGAAGGGATCATGGATATAGGGCTTCCAACAGATGTAAAGCACGTAACCCACATTG GGTTTGATGATCATGAAGCAATCTCGTCCTCTTCATCGTCGTCAGCATCATTGCTTCCGACCGGTGTCGATCAGCGGCCGCTGATTCTTTGTCAATGCGG CGGTTGGGAGAATCTGAGTGGTCCACAATCTCATAATCATCATCGCCAGCTCCTCTGTCTTCATCATTCTTCTTTTGTAAGGCCGGAGCAGCTTCCTCTT GCTTCCCCAGGGGCATCCGATCCAGTACATACAGTCTTTCCCACTTCATCCTGA
AA sequence Show only first row Show all	>Lus10041106 pacid=23179565 polypeptide=Lus10041106 locus=Lus10041106.g ID=Lus10041106.BGIv1.0 annot-version=v1.0 MRAGRRMERLVLLPFTIGCVSESSIAIANHRHIHHPRSRSRPSSSNPLTTTKNNNSPPPSTIGRRLEDDDHSLSSNDEDTKLPISNISAGFHRFLKSFKS TYVNNADDGEEEMEEEGIMDIGLPTDVKHVTHIGFDDHEAISSSSSSSASLLPTGVDQRPLILCQCGGWENLSGPQSHNHHRQLLCLHHSSFVRPEQLPL ASPGASDPVHTVFPTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10041106 [exp]	0	1
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10036433 [exp]	1.0	0.9915
AT2G17940			Plant protein of unknown funct...		Lus10041916 [exp]	1.4	0.9863
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10020890 [exp]	3.5	0.9851
AT2G28315			Nucleotide/sugar transporter f...		Lus10041314 [exp]	5.7	0.9849
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10026487 [exp]	6.3	0.9845
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	7.3	0.9832
AT5G37478			TPX2 (targeting protein for Xk...		Lus10020800 [exp]	8.1	0.9759
AT1G11655			unknown protein		Lus10020050 [exp]	8.7	0.9716
AT2G28315			Nucleotide/sugar transporter f...		Lus10041315 [exp]	8.8	0.9815
AT3G61750			Cytochrome b561/ferric reducta...		Lus10012625 [exp]	10.2	0.9786

Compare expression of checked genes

Lus10041106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.