Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18530 370 / 6e-127 Protein of unknown function (DUF707) (.1) AT4G12840 356 / 3e-121 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G11170 311 / 5e-103 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G61240 296 / 3e-97 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) AT1G08040 223 / 2e-69 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT3G27470 223 / 3e-69 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT1G67850 219 / 7e-68 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) AT2G28310 217 / 3e-67 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) AT1G24570 216 / 7e-67 Protein of unknown function (DUF707) (.1) AT3G26440 213 / 8e-66 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036434 [exp] 604 / 0 AT4G12840 402 / 9e-139 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006728 [exp] 312 / 1e-103 AT1G61240 533 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10018456 [exp] 300 / 1e-98 AT1G61240 504 / 1e-178 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10038303 [exp] 298 / 4e-98 AT1G61240 507 / 2e-179 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10011228 [exp] 290 / 1e-92 AT1G61240 507 / 4e-177 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Lus10002141 [exp] 296 / 2e-91 AT1G53140 1204 / 0.0 Dynamin related protein 5A (.1) Lus10011414 [exp] 232 / 8e-73 AT1G67850 611 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10006472 [exp] 230 / 2e-72 AT1G67850 598 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Lus10032090 [exp] 231 / 4e-72 AT3G27470 564 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G053000 [exp] 418 / 1e-145 AT4G18530 444 / 4e-156 Protein of unknown function (DUF707) (.1) Potri.004G227700 [exp] 359 / 1e-122 AT4G18530 466 / 1e-164 Protein of unknown function (DUF707) (.1) Potri.003G003100 [exp] 359 / 1e-122 AT4G18530 480 / 4e-170 Protein of unknown function (DUF707) (.1) Potri.014G175800 [exp] 335 / 2e-113 AT4G12840 482 / 1e-170 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.011G045300 [exp] 315 / 4e-105 AT1G61240 534 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.004G036800 [exp] 308 / 2e-102 AT1G61240 535 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3), Protein of unknown function (DUF707) (.4) Potri.010G047200 [exp] 233 / 4e-73 AT1G67850 581 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.008G185600 [exp] 230 / 4e-72 AT1G67850 610 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2) Potri.009G011000 [exp] 224 / 3e-70 AT2G28310 608 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2), Protein of unknown function (DUF707) (.3) Potri.017G065200 [exp] 219 / 1e-67 AT3G27470 605 / 0.0 Protein of unknown function (DUF707) (.1), Protein of unknown function (DUF707) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05212 [flax] [poplar] DUF707 Protein of unknown function (DUF707)
Representative CDS sequence Show only first row Show all	>Lus10041107 pacid=23179726 polypeptide=Lus10041107 locus=Lus10041107.g ID=Lus10041107.BGIv1.0 annot-version=v1.0 ATGCTGCAGATATCCAGATCACCTGCGGATTCCAAACCCAGATCATCATGTCTTCGTAGCGTCTTCCCAACTGCTTCAATCGTTCTTGTTGTATTGTTCT TCGTCGGCAGCGTGGTGCTTGTTCCCGGCAAGAAACAGATACTGACAAGATCAACAGTAGTAGAGAGTTCTGGGAATCTGAATGCTACAAATTGTGAGGA CAAAAGCAAAAGACCAGATGGAAGTGAGACATTGCCACAGGGAATTATTAAAAAGACTTCAAATTTGCGGATGAGACCCTTATGGGGCAAAGTTGCAAAA ATAAGAACACAACAAAATCTGTATGCAGCAGCTGTTGGGATTCAGCAGAAAGACCTTGTAAATAAGATGGTAACAAAGTTCCTTTCGAGTGATTTCACGG TGATGCTGTTCCACTACGATGGTGCTGTCGACGAGTGGAGCGAGTTTAGCTGGAGCTCGAGCGTCGTTCATGTCTCTGCACTTAATCAGACCAAATGGCA AGTGTGGTTTGCGAAGCGGTTCTTGCACCCAGATATAGTCGCGGAGTACGACTACATATTCTTATGGGACGAGGACATCGGAGTTGACCATTTCGATCCA ACCAGGTACATTTCGATCGTTGCAAGTGAAGGTCTAGAGATATCACAGCCAGCACTGGAGATTGGGAAATCAGAGATACATCAGCAGATCACTGCTCGGG CCAATTCTCGAGTCCACAGACGAATGTACAAGGCAGGGTCTTGTGACGGGAGTAGCAATGCGCCACCCTGTACCGGATGGGTGGAGATGATGACTCCTGT TTTCTCCAGAAACGCCTGGCGTTGCGTTTGGTACATGATACAGAACGACTTGATTCATGCATGGGGTCTGGATTATCGGCTTGGCTACTGTGCTCAGGGT GATCGAACAAAAAACATTGGAGTTGTAGATGCAGAGTATGTAACTCATTACGGTCGTCCTACACTCGGAGGAGGAGGCTCGAATAAGGGCCCTCCTGCAG GGCAACAAAGAGACCCACATGAACTAGACCCCAGAATTGAAGTGAGAAGGCAGTCGTACAACGAATACAAAGTGTTTAAACGTCGCTGGGCAAAAGCAGC TGAGCAGGATACATGTTGGATTGATCCGTACGAGCAATGA
AA sequence Show only first row Show all	>Lus10041107 pacid=23179726 polypeptide=Lus10041107 locus=Lus10041107.g ID=Lus10041107.BGIv1.0 annot-version=v1.0 MLQISRSPADSKPRSSCLRSVFPTASIVLVVLFFVGSVVLVPGKKQILTRSTVVESSGNLNATNCEDKSKRPDGSETLPQGIIKKTSNLRMRPLWGKVAK IRTQQNLYAAAVGIQQKDLVNKMVTKFLSSDFTVMLFHYDGAVDEWSEFSWSSSVVHVSALNQTKWQVWFAKRFLHPDIVAEYDYIFLWDEDIGVDHFDP TRYISIVASEGLEISQPALEIGKSEIHQQITARANSRVHRRMYKAGSCDGSSNAPPCTGWVEMMTPVFSRNAWRCVWYMIQNDLIHAWGLDYRLGYCAQG DRTKNIGVVDAEYVTHYGRPTLGGGGSNKGPPAGQQRDPHELDPRIEVRRQSYNEYKVFKRRWAKAAEQDTCWIDPYEQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12840			Protein of unknown function (D...		Lus10041107 [exp]	0	1
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017705 [exp]	1.4	0.9467
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027940 [exp]	1.7	0.9470
AT3G06390			Uncharacterised protein family...		Lus10012808 [exp]	6.5	0.9320
AT5G13500			unknown protein		Lus10009691 [exp]	8.9	0.9277
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037577 [exp]	9.6	0.9366
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10036274 [exp]	9.8	0.9432
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10025681 [exp]	11.2	0.9174
AT1G68820			Transmembrane Fragile-X-F-asso...		Lus10035057 [exp]	12.6	0.9342
AT1G25500			Plasma-membrane choline transp...		Lus10034295 [exp]	13.0	0.8959
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10020610 [exp]	13.1	0.9005

Compare expression of checked genes

Lus10041107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.