Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38670 215 / 1e-70 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT2G17860 140 / 8e-42 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75800 140 / 3e-41 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 135 / 3e-39 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G36010 132 / 2e-38 Pathogenesis-related thaumatin superfamily protein (.1.2) AT5G24620 129 / 5e-37 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 123 / 3e-35 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT4G36000 118 / 7e-34 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 115 / 3e-32 ATLP-3 thaumatin-like protein 3 (.1) AT1G73620 115 / 4e-32 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013560 [exp] 141 / 1e-41 AT1G75800 173 / 6e-70 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 139 / 8e-41 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 138 / 2e-40 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017265 [exp] 138 / 4e-40 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 132 / 4e-38 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 132 / 5e-38 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028447 [exp] 124 / 8e-35 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 122 / 9e-34 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10031346 [exp] 115 / 9e-34 AT1G73620 189 / 3e-62 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G132200 [exp] 224 / 8e-74 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.005G112700 [exp] 161 / 2e-49 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G240900 [exp] 149 / 1e-44 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.002G020500 [exp] 147 / 1e-43 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G241000 [exp] 127 / 7e-36 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.002G020400 [exp] 124 / 7e-35 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112600 [exp] 120 / 2e-33 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.015G000800 [exp] 119 / 3e-33 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G014574 [exp] 118 / 5e-33 AT1G75800 294 / 8e-100 Pathogenesis-related thaumatin superfamily protein (.1) Potri.004G173200 [exp] 118 / 1e-32 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10041108 pacid=23179791 polypeptide=Lus10041108 locus=Lus10041108.g ID=Lus10041108.BGIv1.0 annot-version=v1.0 ATGCTCGTTTACCCCAAAAAAGTGACCCGAGGCGGCTGCGGCGCCACCGGGTGTTTGATCGACCTGAACGGCGCGTGCCCTAGGGATTTAAAGGTGATGG CGCGTGAGAAAGGGAAGGTCGGCGGGGTTGGGTGTAGGAGCGCTTGTGAGGCGTTTGGGGATCCGAGGTTTTGCTGCGCTGGGGCTTATGCCACGCCGGA GACTTGTGGACCGTCGGATTACTCTCTGTTTTTCAAGTATGCTTGTCCACGGTCATATAGCTACGCTTATGATGATAAGACGAGTACGTATACTTGTGCT GATACGGATTATGTCATCGTTTTCTGCCCACACCCTTATGCCAGTGAGGAAATTCTGGGGAGAAGGAAAGACGGGGCAGCATTGCCACTGGTAAACAAGA CAACAATGTACTGGCCTAGCAGACATCCCAATCCCGCTTTCTCTTCAGAGGCGACTACTCTGCCTGTTTCTCTCCTTCAATCCTCCAAGTCAAAAAGAGG CTGA
AA sequence Show only first row Show all	>Lus10041108 pacid=23179791 polypeptide=Lus10041108 locus=Lus10041108.g ID=Lus10041108.BGIv1.0 annot-version=v1.0 MLVYPKKVTRGGCGATGCLIDLNGACPRDLKVMAREKGKVGGVGCRSACEAFGDPRFCCAGAYATPETCGPSDYSLFFKYACPRSYSYAYDDKTSTYTCA DTDYVIVFCPHPYASEEILGRRKDGAALPLVNKTTMYWPSRHPNPAFSSEATTLPVSLLQSSKSKRG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38670			Pathogenesis-related thaumatin...		Lus10041108 [exp]	0	1
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10024187 [exp]	3.5	0.7229
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Lus10018200 [exp]	5.1	0.7271
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10040927 [exp]	7.3	0.7312
AT5G04460			RING/U-box superfamily protein...		Lus10038656 [exp]	11.6	0.7253
AT1G14310			Haloacid dehalogenase-like hyd...		Lus10036740 [exp]	13.2	0.7031
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Lus10043464 [exp]	19.1	0.7212
AT1G80230			Rubredoxin-like superfamily pr...		Lus10035917 [exp]	24.5	0.6752
AT3G08820			Pentatricopeptide repeat (PPR)...		Lus10022758 [exp]	35.3	0.6692
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10016361 [exp]	50.5	0.6506
AT3G22540			Protein of unknown function (D...		Lus10010564 [exp]	51.2	0.6935

Compare expression of checked genes

Lus10041108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.