Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17370 340 / 2e-114 UBP1B oligouridylate binding protein 1B (.1.2) AT3G14100 327 / 3e-109 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G54080 309 / 3e-102 UBP1A oligouridylate-binding protein 1A (.1.2) AT3G19130 110 / 2e-26 ATRBP47B RNA-binding protein 47B (.1) AT1G49600 107 / 2e-25 ATRBP47A RNA-binding protein 47A (.1) AT5G19350 106 / 3e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G54900 106 / 3e-25 ATRBP45A RNA-binding protein 45A (.1) AT1G11650 105 / 5e-25 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G47490 102 / 1e-23 ATRBP47C RNA-binding protein 47C (.1.2) AT1G47500 99 / 1e-22 ATRBP47C' RNA-binding protein 47C' (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036435 [exp] 511 / 6e-176 AT4G38670 417 / 7e-139 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Lus10011924 [exp] 343 / 1e-115 AT1G17370 578 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10008130 [exp] 337 / 4e-113 AT1G17370 664 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10027641 [exp] 332 / 3e-111 AT1G17370 569 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10013167 [exp] 276 / 3e-90 AT1G17370 575 / 0.0 oligouridylate binding protein 1B (.1.2) Lus10031277 [exp] 108 / 4e-26 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031844 [exp] 108 / 4e-26 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012071 [exp] 102 / 2e-24 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10021754 [exp] 103 / 4e-24 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G279600 [exp] 435 / 5e-152 AT1G17370 469 / 9e-165 oligouridylate binding protein 1B (.1.2) Potri.018G002300 [exp] 435 / 1e-151 AT1G17370 461 / 1e-161 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 361 / 1e-122 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.003G069000 [exp] 356 / 1e-120 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.006G139300 [exp] 345 / 1e-116 AT1G17370 580 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.009G054400 [exp] 114 / 4e-28 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G105300 [exp] 106 / 3e-25 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.014G034600 [exp] 106 / 4e-25 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.004G143400 [exp] 105 / 6e-25 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.011G138400 [exp] 105 / 7e-25 AT4G27000 463 / 1e-162 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10041109 pacid=23179966 polypeptide=Lus10041109 locus=Lus10041109.g ID=Lus10041109.BGIv1.0 annot-version=v1.0 ATGCAACAGAGATTGAAACAACAACAGCAACAACAACAACATCAAGCCCTAATGCATCAAGCTATACTCCAACAACAACAAATGTACCATCCAGGTGTTC TAGCAGCAGCCATGTCTCAGATGGAACCAATTCCTAGTGGCAATCTACCTCCTGGATTCGACTCATCCACTTGTCGCAGTGTTTATGGACAAGCTTTAAA GGTGAATTGGGCGTATGCAAATAGTCAACGAGAAGATACATCAGGACATTTTCACATATTTGTTGGAGACTTGAGCCCAGAGGTTACTGACGCAACTTTG TTTGCATGCTTCTCAGTCTACCCTAGTTGCTCGGATGCAAGAGTGATGTGGGATCACAAGACTGGTCGGTCCAAAGGATATGGCTTTGTCTCCTTCAGAA ACCAGCAGGAGGCCCAAAGTGCCATCAATGATTTAACTGGGAAATGGCTTGGAAATAGGCAAATAAGATGCAACTGGGCCACTAAAGGTGTGCTATCAAG TGAAGACAAACAAAGCAGTGACAGCCAAAACGCTGTCGTTCTTACAAATGGATCTCCAGCAGAAGAAGAAGAAGGTGAAGAAAGCAACAACAGTAATGAA GAGGCACCTGAAAAGAACCCAGCTTACACTACTGTCTACGTTGGCAATTTGTCGTACGAGGTGACTCAAGCAGAGCTGCATTGCCATTTCCATGCACTTG GAGTTGGCTGCATCGAAGAGGTTCGGATTCAGAGAGATAAAGGGTTTGGATTTGTGAGGTATAACACCCATGAAGAAGCCACTTCTGCTATTCGAATGGG TAATGGAAAGATCGTCCATGGCAAACCCATGAAGTGCTCATGGGGAAGCAAGCCAACACCAGTAGGAACAATATCAAACCCTCTACCCCCTCCACCACAG CAAACATACCAAATCATCACATCAGCAGCAGCAGCAGCAGCAGCAAACATGAGCCACAATCATCATCACCATCATCAAGCAGGTGGATACACTGCAGCTG ATCTGTTAATATACCAGAGACAACTTGCCTTGAGCCAAGCTGCTGGCCTTTCGGGACAAGCTCTTGTTCAGTTCACCGGACAACATGGCTTAGGCTCTGC TGTCTCCCAAGCTCTGTACGATGGCTACCCCAATGGTTCTGCAGCTCAGCAGCTTATGTACTATCACTAA
AA sequence Show only first row Show all	>Lus10041109 pacid=23179966 polypeptide=Lus10041109 locus=Lus10041109.g ID=Lus10041109.BGIv1.0 annot-version=v1.0 MQQRLKQQQQQQQHQALMHQAILQQQQMYHPGVLAAAMSQMEPIPSGNLPPGFDSSTCRSVYGQALKVNWAYANSQREDTSGHFHIFVGDLSPEVTDATL FACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRNQQEAQSAINDLTGKWLGNRQIRCNWATKGVLSSEDKQSSDSQNAVVLTNGSPAEEEEGEESNNSNE EAPEKNPAYTTVYVGNLSYEVTQAELHCHFHALGVGCIEEVRIQRDKGFGFVRYNTHEEATSAIRMGNGKIVHGKPMKCSWGSKPTPVGTISNPLPPPPQ QTYQIITSAAAAAAANMSHNHHHHHQAGGYTAADLLIYQRQLALSQAAGLSGQALVQFTGQHGLGSAVSQALYDGYPNGSAAQQLMYYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10041109 [exp]	0	1
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10038891 [exp]	1.0	0.9233
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032222 [exp]	1.4	0.9184
AT1G62660			Glycosyl hydrolases family 32 ...		Lus10032242 [exp]	1.7	0.8287
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10012893 [exp]	186.7	0.7890
AT4G35160			O-methyltransferase family pro...		Lus10001510 [exp]	197.4	0.7461
					Lus10027917 [exp]	198.2	0.7682
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	207.3	0.7159
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Lus10026147 [exp]	214.1	0.7707
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10033355 [exp]	228.0	0.7647
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10012759 [exp]	252.4	0.7180

Compare expression of checked genes

Lus10041109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.