Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036436 [exp] 924 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G167800 [exp] 753 / 0 ND / Potri.007G089400 [exp] 612 / 0 ND / Potri.005G078500 [exp] 583 / 0 ND / Potri.007G010000 [exp] 481 / 1e-166 ND / Potri.002G093000 [exp] 318 / 1e-106 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00150 [flax] [poplar] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Lus10041110 pacid=23179883 polypeptide=Lus10041110 locus=Lus10041110.g ID=Lus10041110.BGIv1.0 annot-version=v1.0 ATGAAATCCATCTCCCCGATACACTTCTTCTTATCACTCTGTTTCGCCTTTGGTGTATCCAATGGCAGATTGATGACAGATACGAGGATTCGAGCCGTTA ACCTTGGAGGATGGCTGGTTACAGAAGGCTGGATTAAGCCATCTCTGTTTGATGGAATACCCAACAAAGATTTCCTGGATGGAACAGAGCTTCAGTTGAA ATCAGTTACAGTTGGAAAGTACCTCTGCGCCGAGAATGGCGGAGGAAGCATCCTCGTCGCCAACAGGACATCTGCCTCCGGATGGGAGTCTTTCAGACTA TGGAGAAACAACGAGAAAAGTTTCGGCTTCAGGGTGTTCAGCGGACAGTTCGTCAGTGTTGGTGCGAATGGAATCCTCGACACGTTGGCTTCGACGGACA AAGACAAATTCCAGATTGTTCGGAGCAGCAGTGATCCCAACCGGATTCGAATCAAAGCTGCAAACGGTTTGTTTATGCAGGTGAAGACAGAGGAATTAGT GACGGCTGATAACAAAGGAGAAGGGGATTGGGGAGATCAAGATCCATCTGTATTTGTCATGAGGATTTCAAGAAGGTTGCAGGGTGAGTTTCAGGTTACT AATGGCTATGGTCCAACTTTGGCACCACAAGTTATGAGGGAACATTGGAACACATTCATAGTTGAAGAAGACTTCAAGTTCATTTCCCAGAACCGGTTAA ACTCAGTCAGGATACCAGTTGGGTGGTGGATAGCTAGTGACCCGAACCCGCCTCAACCATTTGTAGGCGGGTCCTTGAATGCTCTGGATAATGCCTTCCG TTGGGCAGAAAAATATGGACTTAAGGTCATAGTTGACTTACATGCCGCACCCGGATCGCAGAACGGGTTCGAGCACAGCAGCTCGAGGGACGGTTCGCAA GAGTGGGGGCTCACCGACGAAAACATTCAACAAACCGTCAACGTGATAGACTTCTTGAGTGCTAGGTACGCAAAGAGCCAGAGTTTGTACGCTGTTGAGC TTATCAACGAGCCATTGTCCCCCGGAGTGTCGTTGGCTAATGTGGAGAAGTATTACAAGGCCGGCTACGACGCCGTTCGGAGGCACTCGTCAACTGCCTA CGTGGTGCTGTCGAACCGGCTGGGGGATAGTCAACCCAGAGAGCTTTTCACACTTGCAAGTGGGTTGAAAGGTGCCGTGATTGATGTCCACTATTACAAT CTCTTCTCCTCCGTTTTTGACGACCTAACCCCCCAACAGAACGTTGACTTTGTCAACGTCAACCGGTCTGCTGAGTTGAATCATTTGACTATTTCCAACG GACCACTCATCTTCATTGGGGAGTGGGTAGCAGAGTGGCAAGTTCAAAGTGCAAGCAAAGAAGATTACAAAAGATTTGGCCAAGCACAACTGGAGGTTTA TGGGCGTGCTACTTTTGGTTGGTCTTATTGGACTCTCAAGAATGTCAATAACCATTGGAGTTTGGAGTGGATGATCCAAAATGGCTATATTCAATTTTAG
AA sequence Show only first row Show all	>Lus10041110 pacid=23179883 polypeptide=Lus10041110 locus=Lus10041110.g ID=Lus10041110.BGIv1.0 annot-version=v1.0 MKSISPIHFFLSLCFAFGVSNGRLMTDTRIRAVNLGGWLVTEGWIKPSLFDGIPNKDFLDGTELQLKSVTVGKYLCAENGGGSILVANRTSASGWESFRL WRNNEKSFGFRVFSGQFVSVGANGILDTLASTDKDKFQIVRSSSDPNRIRIKAANGLFMQVKTEELVTADNKGEGDWGDQDPSVFVMRISRRLQGEFQVT NGYGPTLAPQVMREHWNTFIVEEDFKFISQNRLNSVRIPVGWWIASDPNPPQPFVGGSLNALDNAFRWAEKYGLKVIVDLHAAPGSQNGFEHSSSRDGSQ EWGLTDENIQQTVNVIDFLSARYAKSQSLYAVELINEPLSPGVSLANVEKYYKAGYDAVRRHSSTAYVVLSNRLGDSQPRELFTLASGLKGAVIDVHYYN LFSSVFDDLTPQQNVDFVNVNRSAELNHLTISNGPLIFIGEWVAEWQVQSASKEDYKRFGQAQLEVYGRATFGWSYWTLKNVNNHWSLEWMIQNGYIQF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041110 [exp]	0	1
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	5.4	0.8907
AT4G15630			Uncharacterised protein family...		Lus10012809 [exp]	5.9	0.8793
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10031676 [exp]	7.7	0.8861
AT5G47060			Protein of unknown function (D...		Lus10043343 [exp]	10.4	0.8820
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10041990 [exp]	11.5	0.8699
AT1G73280		SCPL3	serine carboxypeptidase-like 3...		Lus10018667 [exp]	13.5	0.8892
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10039414 [exp]	15.5	0.8585
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10012531 [exp]	15.7	0.8773
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10022883 [exp]	15.7	0.8746
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Lus10027321 [exp]	17.3	0.8592

Compare expression of checked genes

Lus10041110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.