Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036438 [exp] 239 / 5e-82 ND / Lus10018519 [exp] 42 / 6e-05 ND / Lus10039737 [exp] 42 / 7e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G141600 [exp] 47 / 7e-07 ND / Potri.005G204000 [exp] 46 / 3e-06 ND / Potri.002G058200 [exp] 45 / 7e-06 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10041112 pacid=23179845 polypeptide=Lus10041112 locus=Lus10041112.g ID=Lus10041112.BGIv1.0 annot-version=v1.0 ATGGACGCCAAACTAAGACAGTCGGCGTCGTCGACCAAAGTATGCAAGAAAGAGAGGCGAAACGGCTGCAAGTCGTCGTCGTCGTCGTTGAGTTCGACGA CCACGAGCAGTTTGATGAGCATCCTCCGCCCCAAAGTTTACATCACCGACACTTCAAGCTTCAAGAGCCTCGTCCAGGAGCTCACCGGACGATCAAACTA TCCCCTGCCGCCGGTATCCGCCGCCGCCACGTCAGCATCGTCGTCCATTCCGAATCTCAGTGAATCCCAAGATTATACCGACCACGTAGAAGGGTCGTCG TCCGACGTCACTACTGGGACTGGGGCCCATTTCTTCTCTTGCTATGATGATGATGCTGTCGCAGGTGAGGTGGTTATCGGCGGCGCCGGTGAAGGGAGTT ACGGTGACGTCATGCATGACGGGATGGATCTTTTGACCTACAGGCTGCTGGAGTCGTGGCTTTTGGATACGAATCATCGTGGTAACGATCATGTTGTGAC GAATTAA
AA sequence Show only first row Show all	>Lus10041112 pacid=23179845 polypeptide=Lus10041112 locus=Lus10041112.g ID=Lus10041112.BGIv1.0 annot-version=v1.0 MDAKLRQSASSTKVCKKERRNGCKSSSSSLSSTTTSSLMSILRPKVYITDTSSFKSLVQELTGRSNYPLPPVSAAATSASSSIPNLSESQDYTDHVEGSS SDVTTGTGAHFFSCYDDDAVAGEVVIGGAGEGSYGDVMHDGMDLLTYRLLESWLLDTNHRGNDHVVTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10041112 [exp]	0	1
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Lus10032695 [exp]	2.0	0.9181
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10017444 [exp]	4.2	0.9227
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10032926 [exp]	10.5	0.9188
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10036800 [exp]	10.7	0.9249
AT1G13550			Protein of unknown function (D...		Lus10031914 [exp]	16.9	0.9040
					Lus10012067 [exp]	17.3	0.9006
AT2G42430	AS2	ASL18, LBD16	ASYMMETRIC LEAVES2-LIKE 18, la...		Lus10033872 [exp]	19.9	0.8922
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Lus10013887 [exp]	32.9	0.9101
					Lus10011653 [exp]	34.9	0.9159
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10016427 [exp]	38.5	0.9176

Compare expression of checked genes

Lus10041112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.