Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01450 187 / 4e-56 Protein kinase superfamily protein (.1) AT5G41730 167 / 7e-47 Protein kinase family protein (.1) AT1G64300 165 / 3e-46 Protein kinase family protein (.1.2) AT5G01850 67 / 2e-12 Protein kinase superfamily protein (.1) AT1G62400 63 / 4e-11 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT4G31170 62 / 8e-11 Protein kinase superfamily protein (.1.2.3.4) AT2G17700 62 / 2e-10 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT2G35050 61 / 4e-10 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G24360 59 / 7e-10 Protein kinase superfamily protein (.1) AT1G16270 60 / 9e-10 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036439 [exp] 476 / 2e-165 AT1G64300 599 / 0.0 Protein kinase family protein (.1.2) Lus10041114 [exp] 475 / 7e-165 AT1G64300 600 / 0.0 Protein kinase family protein (.1.2) Lus10032357 [exp] 168 / 9e-48 AT1G64300 581 / 0.0 Protein kinase family protein (.1.2) Lus10033941 [exp] 167 / 7e-47 AT1G64300 796 / 0.0 Protein kinase family protein (.1.2) Lus10022653 [exp] 69 / 7e-13 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 69 / 8e-13 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10025236 [exp] 68 / 9e-13 AT5G01850 493 / 3e-176 Protein kinase superfamily protein (.1) Lus10023989 [exp] 69 / 1e-12 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 68 / 2e-12 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G095200 [exp] 208 / 3e-62 AT1G64300 749 / 0.0 Protein kinase family protein (.1.2) Potri.003G137000 [exp] 163 / 2e-45 AT1G64300 781 / 0.0 Protein kinase family protein (.1.2) Potri.005G246500 [exp] 72 / 4e-14 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 69 / 8e-13 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 69 / 9e-13 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 68 / 1e-12 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 67 / 3e-12 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 67 / 3e-12 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.018G001800 [exp] 66 / 4e-12 AT2G24360 663 / 0.0 Protein kinase superfamily protein (.1) Potri.004G179514 [exp] 66 / 4e-12 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10041113 pacid=23179941 polypeptide=Lus10041113 locus=Lus10041113.g ID=Lus10041113.BGIv1.0 annot-version=v1.0 ATGTTAACGGAGAAGTCGGATGTGTACAGCTTCGCGATGGTGTGTTTTGAAATCCTGACTGGAAAAGTGCCGTTCGAAGACAGTCATCTCCAGGGAGCCA GGATGGCCCGCAACATTCTAGCAGGGGAACGACCGTTGTTTCCATCTCATACACCGAAATTCGTGGCCAATTTCACGAAAAGATGTTGGCATCCTGACCC AAATTCCCGCCCAGGATTTTCGACCATCTGCAGGATCCTTCGATACGCGAAGAAGTTCGTCCTTCTCACGAATCCTCCAAACAGTCAGGACGCCACCACT CCCACGGTCGCGCCCCTGCTGGATTACTTAGAGATAGATTCCAAGCTTCACCGAAGATTCCAGTCCGGGGAGAATCCTGACATCTCCGCTGTGTCAGAGG TGTCGTTTCAAATGTTTGCTTACAAGGTAATGGAGATGGAGAGGATGTCGTCGGCGGGGAAGGAATTAACCACTTCGGAATCGTCAGGAAGCGACCTGAG CGGAGATGAAGCTGCGTTGGTGGACGTGATGGATCCGTTCAGGAGTCCTGACAGGAATAGTAGTAGTGCTTGTAGCAGTACCCATAATACGCTACGGTTG TCCTCGTCCCCTGAAGCGACGATGACCGCATCACTGCCGGTTCTTAAGAGGTCGTCAACGGTTGGTTCCAAGAGAGCGACGTTTGATCCATGGAAGACAT CCCCCAAACATCCAGGGACACCGAGAGGGAGAGCAACGAGGCCGCCTCCACTGGGGCAATGTGTTGGAGGAGGGAGGAGCATGAGAATGAATTCAGAGAG TCAGTTGATGAACATGGCCAGTCCCAAGGTCACTAGGAGAACTACAACCGGCCATGCTTCCGATTCTGAGCTTTGA
AA sequence Show only first row Show all	>Lus10041113 pacid=23179941 polypeptide=Lus10041113 locus=Lus10041113.g ID=Lus10041113.BGIv1.0 annot-version=v1.0 MLTEKSDVYSFAMVCFEILTGKVPFEDSHLQGARMARNILAGERPLFPSHTPKFVANFTKRCWHPDPNSRPGFSTICRILRYAKKFVLLTNPPNSQDATT PTVAPLLDYLEIDSKLHRRFQSGENPDISAVSEVSFQMFAYKVMEMERMSSAGKELTTSESSGSDLSGDEAALVDVMDPFRSPDRNSSSACSSTHNTLRL SSSPEATMTASLPVLKRSSTVGSKRATFDPWKTSPKHPGTPRGRATRPPPLGQCVGGGRSMRMNSESQLMNMASPKVTRRTTTGHASDSEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	0	1
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	2.4	1.0000
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	4.7	1.0000
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	5.7	1.0000
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	6.6	1.0000
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	7.4	1.0000
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10017911 [exp]	7.5	1.0000
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	8.1	1.0000
AT1G77460			Armadillo/beta-catenin-like re...		Lus10029690 [exp]	8.8	0.9905
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10039859 [exp]	8.9	1.0000
					Lus10011314 [exp]	9.2	0.9763

Compare expression of checked genes

Lus10041113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.